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to pathway-commons-announcements
Version 10 of Pathway Commons is now online!
Pathway Commons collects and integrates pathway and interaction data from public databases.
**Over 53 000 pathways -- Over 3 million interactions -- 23 data sources**
Access this data via web apps, data downloads, web services and software tools designed for experimental biologists, computational biologists and software developers.
Data: Obtain integrated and normalized data from individual data providers or altogether. File downloads (http://www.pathwaycommons.org/pc2/downloads) are available in Biological Pathway Exchange (BioPAX), simple interaction format (SIF) and gene set database (GMT) formats. Web services (http://www.pathwaycommons.org/pc2/) include full-text search and retrieval in the same formats as downloads in addition to systems biology graphical notation (SBGN) and Javascript Object Notation for Linked Data (JSON-LD). Try the SIF web services (http://www.pathwaycommons.org/sifgraph/swagger-ui.html) for rapid graph-theoretical queries of a binary interaction network.