Version 9 of Pathway Commons is now online!
Pathway Commons collects and integrates pathway and interaction data from public databases.
**Over 4 000 pathways -- Over 1.3 million interactions -- 22 data sources**
Access this data via web apps, data downloads, web services and software tools designed for experimental biologists, computational biologists and software developers.
Web Apps: Find and view pathways with our new Search app by entering a pathway name or gene list. Find and view interactions between one or more genes with PCViz.
Tools: Access Pathway Commons from Cytoscape using the CyPath2 app or from R via the paxtoolsR package. View and edit pathways in BioPAX using the Chisio BioPax Editor (ChiBE). Validate BioPAX data using the Paxtools (Java BioPAX toolbox) library.
Training: Visit our new Guide online textbook to access case studies, primers, presentations and workflows supporting pathway analysis of experimental data.
Join our Google Group (groups.google.com/forum/#!forum/pathway-commons-help/join
) to ask a question, make a suggestion or just to tap into the PC community.
The Pathway Commons Team