no modifications after running annotCompare.config

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Robert King

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Nov 10, 2021, 11:24:18 AM11/10/21

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$PASAHOME/scripts/create_sqlite_cdnaassembly_db.dbi -c alignAssembly.config -S /home/data/pasa/opt/pasa-2.4.1/schema/cdna_alignment_sqliteschema

$PASAHOME/scripts/Load_Current_Gene_Annotations.dbi -c alignAssembly.config -g Chilo_suppressalis_v2_genome_220620_correct2.fasta -P chilo_transfer2_corrected2.gff3

$PASAHOME/Launch_PASA_pipeline.pl -c annotCompare.config -A -g v2_genome_220620_correct2.fasta -t formatted_okay.fa --CPU 10

I'm getting no errors but no modifications at the end. Identical gene models. A ideas why no changes would be seen? all options in schema etc are default.

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