INFO | 2021-01-03 12:35:11,371 | NumExpr defaulting to 6 threads.
INFO | 2021-01-03 12:35:37,433 | ------------- PartitionFinder 2.1.1 -----------------
INFO | 2021-01-03 12:35:37,433 | You have Python version 2.7
INFO | 2021-01-03 12:35:37,434 | Command-line arguments used: /partitionfinder/PartitionFinder.py /mnt/c/Desktop/final_edit/
INFO | 2021-01-03 12:35:37,434 | ------------- Configuring Parameters -------------
INFO | 2021-01-03 12:35:37,435 | Setting datatype to 'DNA'
INFO | 2021-01-03 12:35:37,435 | Setting phylogeny program to 'phyml'
INFO | 2021-01-03 12:35:37,435 | Program path is here
INFO | 2021-01-03 12:35:37,436 | Setting working folder to: '/mnt/c/Users/dell/Desktop/copam/final_edit'
INFO | 2021-01-03 12:35:37,437 | Loading configuration at '…/partition_finder.cfg'
INFO | 2021-01-03 12:35:37,493 | Setting 'alignment' to 'allseqs.phy'
INFO | 2021-01-03 12:35:37,494 | Setting 'branchlengths' to 'linked'
INFO | 2021-01-03 12:35:37,496 | You set 'models' to: HKY+G, GTR+G, HKY+G+X, GTR+G+X, GTR+I+G, HKY+I+G, GTR+I+G+X, HKY+I+G+X, HKY+I+X, GTR+I+X
INFO | 2021-01-03 12:35:37,906 | This analysis will use the following 10 models of molecular evolution
INFO | 2021-01-03 12:35:37,906 | HKY+G, GTR+G, HKY+G+X, GTR+G+X, GTR+I+G, HKY+I+G, GTR+I+G+X, HKY+I+G+X, HKY+I+X, GTR+I+X
INFO | 2021-01-03 12:35:37,907 | Setting 'model_selection' to 'aicc'
INFO | 2021-01-03 12:35:50,490 | Setting 'search' to 'greedy'
INFO | 2021-01-03 12:35:50,492 | ------------------------ BEGINNING NEW RUN -------------------------------
INFO | 2021-01-03 12:35:50,493 | Looking for alignment file './allseqs.phy'...
INFO | 2021-01-03 12:35:50,494 | Using 6 cpus
INFO | 2021-01-03 12:35:50,494 | Beginning Analysis
INFO | 2021-01-03 12:35:54,345 | Reading alignment file './allseqs.phy'
INFO | 2021-01-03 12:36:21,757 | Starting tree will be estimated from the data.
INFO | 2021-01-03 12:36:37,461 | Estimating Maximum Likelihood tree with RAxML fast experimental tree search for ./analysis/start_tree/filtered_source.phy
INFO | 2021-01-03 12:36:38,441 | Using a separate GTR+G model for each data block