Error line 2

37 views
Skip to first unread message

Juan Diego Ariza López

unread,
Feb 28, 2021, 8:37:40 PM2/28/21
to PartitionFinder
Hi rob i have this error i appreciate to much if u help me 

C:\Users\home\Anaconda>python "C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\PartitionFinder.py" "C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\examples\nucleotide - alouatta"
INFO     | 2021-02-27 20:51:00,094 | ------------- PartitionFinder 2.1.1 -----------------
INFO     | 2021-02-27 20:51:00,094 | You have Python version 2.7
INFO     | 2021-02-27 20:51:00,094 | Command-line arguments used: C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\PartitionFinder.py C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\examples\nucleotide - alouatta
INFO     | 2021-02-27 20:51:00,095 | ------------- Configuring Parameters -------------
INFO     | 2021-02-27 20:51:00,095 | Setting datatype to 'DNA'
INFO     | 2021-02-27 20:51:00,095 | Setting phylogeny program to 'phyml'
INFO     | 2021-02-27 20:51:00,095 | Program path is here C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\programs
INFO     | 2021-02-27 20:51:00,098 | Setting working folder to: 'C:\Users\home\Desktop\Sis molecular\partition\partitionfinder-2.1.1\examples\nucleotide - alouatta'
INFO     | 2021-02-27 20:51:00,099 | Loading configuration at '.\partition_finder.cfg'
INFO     | 2021-02-27 20:51:00,105 | Setting 'alignment' to 'falouatta.phy'
INFO     | 2021-02-27 20:51:00,107 | Setting 'branchlengths' to 'linked'
INFO     | 2021-02-27 20:51:00,108 | You set 'models' to: GTR, GTR+G, GTR+I+G
C:\Users\home\Anaconda\lib\site-packages\pandas\computation\ops.py:62: DeprecationWarning: object() takes no parameters
  return supr_new(klass, name, env, side=side, encoding=encoding)
C:\Users\home\Anaconda\lib\site-packages\pandas\computation\ops.py:62: DeprecationWarning: object() takes no parameters
  return supr_new(klass, name, env, side=side, encoding=encoding)
C:\Users\home\Anaconda\lib\site-packages\pandas\computation\ops.py:62: DeprecationWarning: object() takes no parameters
  return supr_new(klass, name, env, side=side, encoding=encoding)
C:\Users\home\Anaconda\lib\site-packages\pandas\computation\ops.py:62: DeprecationWarning: object() takes no parameters
  return supr_new(klass, name, env, side=side, encoding=encoding)
INFO     | 2021-02-27 20:51:00,125 | This analysis will use the following 3 models of molecular evolution
INFO     | 2021-02-27 20:51:00,125 | GTR, GTR+G, GTR+I+G
INFO     | 2021-02-27 20:51:00,127 | Setting 'model_selection' to 'aicc'
INFO     | 2021-02-27 20:51:00,134 | Setting 'search' to 'greedy'
INFO     | 2021-02-27 20:51:00,137 | ------------------------ BEGINNING NEW RUN -------------------------------
INFO     | 2021-02-27 20:51:00,138 | Looking for alignment file '.\falouatta.phy'...
INFO     | 2021-02-27 20:51:00,138 | Using 4 cpus
INFO     | 2021-02-27 20:51:00,141 | Beginning Analysis
INFO     | 2021-02-27 20:51:00,177 | Reading alignment file '.\falouatta.phy'
ERROR    | 2021-02-27 20:51:00,178 | Line 2: More supplied than defined in the header
ERROR    | 2021-02-27 20:51:00,183 | Failed to run. See previous errors.

thank u so much. 
Reply all
Reply to author
Forward
0 new messages