partitionfinder issues

[alondon...@gmail.com]

 Hi everybody,

 While running partitionfinder I got the following: Warning, you specified a working directory via "-w" Keep in mind that RAxML only accepts absolute path names, not relative ones! ERROR: Bad base ( ) at site 554 of sequence 1 Printing error context: ATCCCTGCCAGTCTTAGC-                      Problem reading alignment file

I tried different thng to try and fix it but nothing worked, any suggestions? Thank you!

Best,

Alejandro