I was trying to run in on hopper( which a super computer from my university). the command line is "python /tools/partitionfinder-2.1.1/PartitionFinderProtein.py /home/yzs0104/infile"
the error report is "Warning, you specified a working directory via "-w" Keep in mind that RAxML only accepts absolute path names, not relative ones! ERROR trying to assign model 10 to position 2931 while already model 9 has been assigned to this position"
I am confused... if you know the problem solution...Thank you.