I am writing this email with regard to the error message that I am getting on the IQTREE web server while running the analysis.
ERROR: Partition file is not in NEXUS format, assuming RAxML-style partition file...
ERROR: Please specify alignment positions for partitionGTR+G:Subset2, GTR+G:Subset3, GTR+I:Subset4, GTR+G:Subset5, GTR+G:Subset6, GTR+G:Subset7;\
ERROR: end;\
ERROR: \
ERROR: }
Below is the alignment partitioning detail that I am using to run the analysis.
#nexus
begin sets;
charset Subset1 = 1-519;
charset Subset2 = 520-1190;
charset Subset3 = 1191-1906\3;
charset Subset4 = 1192-1906\3;
charset Subset5 = 1193-1906\3;
charset Subset6 = 1907-2276\3;
charset Subset7 = 1908-2276\3 1909-2276\3;
charpartition PartitionFinder = GTR+G:Subset1, K80+G:Subset2, F81:Subset3, GTR+I:Subset4, HKY+G:Subset5, HKY:Subset6, JC:Subset7;
end;
Kindly help me.