PartitionFinder2 error on CIPRES Gateway

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Jeong Sun Park

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Mar 22, 2021, 2:22:37 AMMar 22
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Hi there,

I've been using PartitionFinder for a few years without issue but, getting the same error recently.
If you know the solution, please help me ;_;

Thank you!

Jeong Sun Park.


log.txt

Rob Lanfear

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Mar 22, 2021, 2:24:49 AMMar 22
to PartitionFinder
Hi Jeong Sun Park,

Thanks for the message. This error message from RAxML indicates that you don't have enough information in at least one of your data blocks with which to estimate the models you're trying to estimate. Specifically, at least one of your data blocks is completely lacking one of the four DNA bases. The solution is to merge that data block with another. Which one to merge it with depends on what's most sensible for your particular dataset.

Rob

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