ERROR PARTITIONFINDER IN CIPRES : Exiting without processing (because of the -c/--check-only option

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Angie Tovar

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Jul 19, 2020, 7:39:32 PM7/19/20
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HEY GUYS
I HAVE A PROBLEM FOR RUN PARTITIONFINDER IN CIPRES, ATTACHED MY CFG SCRIPT
## MODELS OF EVOLUTION: all | allx | mrbayes | beast | gamma | gammai | <list> ##
models = all;

# MODEL SELECCTION: AIC | AICc | BIC #
model_selection = aicc;

## DATA BLOCKS: see manual for how to define ##
[data_blocks]
12S = 1-731;
16S = 732-1268;
COI_pos1 = 1269-1843\3;
COI_pos2 = 1270-1843\3;
COI_pos3 = 1271-1843\3;
CYTB_pos1 = 1844-2508\3;
CYTB_pos2 = 1845-2508\3;
CYTB_pos3 = 1846-2508\3;
RAG1_pos1 = 2509-3075\3;
RAG1_pos2 = 2510-3075\3;
RAG1_pos3 = 2511-3075\3;
TYR_pos1 = 3076-3482\3;
TYR_pos2 = 3077-3482\3;
TYR_pos3 = 3078-3482\3;
## SCHEMES, search: all | user | greedy | rcluster | rclusterf | kmeans ##
[schemes]
search = greedy;

IN CYPRESS THIS ERROR COMES OUT 

Mark Miller

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Jul 20, 2020, 2:19:54 PM7/20/20
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Hi Angie,

I had a look at the job run. It looks as though the "just check the config file" option was checked in the interface.
Here is the command line:

partitionfinder2_2.1.1_comet python /projects/ps-ngbt/opt/comet/partionfinder2/partitionfinder-2.1.1/PartitionFinder.py --processes=8 -c --rcluster-percent=10.0

Please check and make sure that box is unchecked. If it is unchecked, please do report it to me via the cipres bug tracker.

Best,
Mark

Angie Tovar

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Jul 20, 2020, 9:56:22 PM7/20/20
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Thank you, I managed to run the program
Best Regards
ATO

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Estudiantes Lic. Biología. Universidad Distrital Francisco José de Caldas, Bogotá,Colombia.
Grupo de Biodiversidad de Alta Montaña. Universidad Distrital Francisco José de Caldas, Bogotá, Colombia.
Biom|ics Lab, Universidad de los Andes, Bogotá, Colombia.
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