Drosophila

[William Gilks]

Hi,

I've called CNVs on a non-disease Drosophila melanogaster population sample, from whole genome resequencing, analysed using GenomeStrip/2.0, with the intention of filtering them with ParseCNV and then converting them to Plink format.

Could you give me some general advice on which functions would be applicable to me.

I've installed ParseCNV. The dummy data analysis generally seems fine except Error: cannot execute system command R CMD BATCH .AllRes.R

My fly vcf data could be processed in to two .rawcnv files nice and quick.

Sincerely,

William Gilks