so this what i tried based on your responses
UUID of working SD Card = a055c329-caaf-4c96-b3dd-bd4484bed126
UUID of ext3 partition on the USB disk = 8c5640e1-8a32-4e2e-8696-f2bf456c63d6
this what i did
1] booted the pandaboard using the sd card and ran ubuntu from the SD card
than in ubuntu i modified the files mention by Vincent
/etc/fstab
# UNCONFIGURED FSTAB FOR BASE SYSTEM
proc /proc proc defaults 0 0
UUID=8c5640e1-8a32-4e2e-8696-f2bf456c63d6 / ext3 defaults,noatime,errors=remount-ro 0 1
#/SWAP.swap none swap sw 0 0
/etc/flash-kernel.conf
UBOOT_PART=/dev/mmcblk0p1
ROOT=UUID=8c5640e1-8a32-4e2e-8696-f2bf456c63d6
/boot/boot.script
fatload mmc 0:1 0x80000000 uImage
fatload mmc 0:1 0x81600000 uInitrd
setenv bootargs quiet splash ro elevator=noop vram=32M mem=460M@0x80000000 mem=512M@0xA0000000 root=UUID=8c5640e1-8a32-4e2e-8696-f2bf456c63d6 fixrtc
bootm 0x80000000 0x81600000
namely as u can see i replaced the UUID of SD card to that of the USB disk
after this i ran the cmd (do i need to chroot to this usbdisk parition and run flash-kernel, i did not do this)
#sudo flash-kernel
after this i shutdown the pandaboard and moved both the USB disk and SD card to my host machine and copied the files over using cp -rfvp <source> <destination>
after this i put them back on the panadaboard
i still get the same error , ubuntu starts to load up and screen blank , i can enter the text console using ctrl + alt + f1 and login but i have the same problem when i try to use sudo
can't open /etc/sudoers permission denied
any help is greatly appreciated
Thanks,
Nitish