fix omega during the batch run

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bilge

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Feb 12, 2024, 8:18:26 AMFeb 12
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CODONML in paml version 4.9j, February 2020


----------------------------------------------

Phe F TTT | Ser S TCT | Tyr Y TAT | Cys C TGT

TTC | TCC | TAC | TGC

Leu L TTA | TCA | *** * TAA | *** * TGA

TTG | TCG | TAG | Trp W TGG

----------------------------------------------

Leu L CTT | Pro P CCT | His H CAT | Arg R CGT

CTC | CCC | CAC | CGC

CTA | CCA | Gln Q CAA | CGA

CTG | CCG | CAG | CGG

----------------------------------------------

Ile I ATT | Thr T ACT | Asn N AAT | Ser S AGT

ATC | ACC | AAC | AGC

ATA | ACA | Lys K AAA | Arg R AGA

Met M ATG | ACG | AAG | AGG

----------------------------------------------

Val V GTT | Ala A GCT | Asp D GAT | Gly G GGT

GTC | GCC | GAC | GGC

GTA | GCA | Glu E GAA | GGA

GTG | GCG | GAG | GGG

----------------------------------------------

Nice code, uuh?


Error: fix omega during batch run?.


\Desktop\paml\bin\codeml.exe -- killed

i did change the parameters but it did not change anything

bilge

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Feb 21, 2024, 4:45:36 PMFeb 21
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i still cannot fix that problem, is there anyone to help?
12 Şubat 2024 Pazartesi tarihinde saat 16:18:26 UTC+3 itibarıyla bilge şunları yazdı:

Sandra AC

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Feb 22, 2024, 2:49:55 AMFeb 22
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Hi there,

I believe there may be a problem with your control file (and, possibly, with your input sequence and tree files too). Could you please share them here so that we can troubleshoot what may be going wrong?

All the best,
S.
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