Combine mcmctree analysis

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Adrian Luczon

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Apr 29, 2026, 4:53:18 AM (2 days ago) Apr 29
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Hello

I have a 1.4 billion basepair alignment that I would like to estimate the divergence time. I ran it using mcmctree on an HPC, but I always run out of memory. I then cut my alignment into smaller 30 million bp chunks. I tried the mcmctree analysis on some of these chunks, and it finally worked. 

I would like to ask if there's any way to combine the results from mcmctree analyses of these different chunks to get a divergence estimate. 

Thank you for the advice.

Adrian
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