Error: check #seqs and tree perhaps too many '('

[egomez]

Hi all,

I am getting the following error when I try to run codeml (branch-sites test):

Error: check #seqs and tree perhaps too many '('

My tree opens and looks fine in figtree and geneious and I am using this exact sequence dataset and tree in another program (HyPhy--albeit reformatted into fasta format, so maybe that is where the error is creeping in?). The number of left and right parentheses seem to be equal...

Does anyone have another idea of something to check? Or see an error I am blind to in the attached files?

Sorry for double-posting! I originally posted this as a reply to a previous thread, but then decided I should try starting a new thread.

Thank you very much!

El

[cajawe]

Try this...

(((((((Cercopithecus_albogularis,(Erythrocebus_patas,Chlorocebus_sabaeus)),(((Cercocebus_chrysogaster,Mandrillus_leucophaeus),(Theropithecus_gelada,Papio_anubis)),Macaca_fuscata)),(Colobus_polykomos,((Nasalis_larvatus,Pygathrix_nemaeus),Rhinopithecus_roxellana))),(((Hylobates_agilis,Symphalangus_syndactylus),Nomascus_leucogenys),((Gorilla_gorilla,(Homo_sapiens,(Pan_paniscus,Pan_troglodytes))),Pongo_abelii))),(Aotus_nancymaae,Saimiri_boliviensis_boliviensis)),(Propithecus_coquereli,Otolemur_garnettii)),Tupaia_chinensis);

[egomez]

Thank you!

I guess I had some extraneous parentheses in there...