subsitutions/site/100Mya
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Bruce Onisko
Apr 7, 2025, 12:48:40 PMApr 7
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I am interested in comparing branch lengths from trees made with IQTree to the MCMC-determined divergence times found between nodes of the same branch so I can calculate the simple ratio which would represent the #amino acid substitutions/site/100 Mya.
Has anyone done this? Perhaps written a script that I can use?
I can extract this by hand, but finding the same nodes in the 2 trees is difficult, even for trees with 200 tips!
Thx in advance!
Bruce
Bruce Onisko
May 28, 2025, 2:09:42 PMMay 28
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I have solved this problem.
If anyone is ever interested feel free to contact me.
Best regards,
Bruce
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