I'd make two changes to ease this problem. The first is I'd take the labels for R9, R15, and R17 and put them next to the ends of the resistors to reduce their effective height including silkscreen. Then I'd move each resistor up a tad to close up that spacing a little bit, and similarly move the headers for all three boards up a bit as well.
This opens up the 3v3 and GND path quite a bit for both the LED and Actuation boards. Next I note that the primary source of ground cuts in that area is the QOUT signal (the motor kill) from routed on the right of the motor header. Rather than routing it through both top and bottom metal, I'd simply cut it through the top metal only to avoid cutting the ground path. This will cut the 3v3 path in half, but there are two major feed paths into that area for 3v3, and they still wouldnt be totally isolated, they would have a moderately strong connection using top metal routing for this signal.'t still face the long feed path through the board, but it's pretty wide overall. If we really wanted to avoid more cuts we could use a jumper to route it through the top metal and weave it around the signals above the motor connector and bellow R9 to maximize the width of the 3v3 path and gnu path bellow the motor connector.
The final note I'd make, is that we can shift the FTDI block upwards a tad to increase the clearance on the bottom edge. By dropping C7 and squeezing the VREG (IC3) and C6 in a bit we open up an area to put a swath of bottom metal along the lower edge of the board to feed ground. Then what we do is reroute the VDD feed path from the USB header via a metal jumper wire over the signal pins, to free up bottom metal to the left of the USB header. Then we can route a main ground path to it's left as a left side feed into the headers.
I realize that's a bit of convolute explanation, so I'm in the lab tonight if you want me to simply point it out visually. I've tried to express it generally with the attached picture. Pink arrows indicate the general flow of moving parts to irk out a bit of room, while the green arrows indicate the flow of the ground path I'd recommend creating on bottom metal. The leftward motion of pink arrows is only a recommendation for the bottom metal movement.
Finally as an aside, with the current layout routing, C1, C3, and C4 can all be removed and simply be incorporated into C2. I'd also rotate C2 180º in place to simply bring it's positive terminal a tad closer to the pin it's connected to.