The 'normal' deployment model is to run ONOS on top of OVX. So you should connect your switches to OVX, and then create a virtual network that points to ONOS.
marc
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In Open Flow, the switch initiates the connection to the controller. So:
1) point your switch to OVX. When you use Open vSwitch, you do something like (BRIDGE is name of bridge, OVX_IP is IP address of OVX).
sudo ovs-vsctl set-controller BRIDGE tcp:OVX_IP:6633
2) point OVX to ONOS. First, create a virtual network, then create virtual switches
ovxctl.py -n createNetwork ONOS_IP SUBNET MASK
ovxctl.py -n createSwitch TENANT_ID DPIDS
marc