Question about Orca output

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Ahmed Abbas

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Jul 3, 2023, 3:47:45 PM7/3/23
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Hi Prof. Zhou,

In the prediction dictionary, 
what is 'normmats' entry?

Also, I downloaded the expected contact frequency file. I understand that the values are log(expected). When I restored "expected" values, they are still very small numbers. If I download the .hic file of the H1 Micro-C data used, and if I get observed and oe matrices, the expected values will be much bigger? So, my question is why are the expected values I downloaded are small? Am I doing something wrong?

Thanks
Ahmed
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