[opdev] structures C/java

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Pierre Lindenbaum

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Nov 4, 2008, 10:50:38 AM11/4/08

to opero...@googlegroups.com, foglio, he...@cng.fr

FYI: I've used Mario's schema to generate my structures. All (but 4
(the ones with packed bytes)) are now generated in 'C' and 'Java'

> ls operon/build/
algorithm.o DTerms_array.o FValue.tab.o IValue_lexer.o
Morgan_lexer.o NoteBk.tab.o PrjLoc_array.o PrjSnp_array.o
scalar.o SeqVar.tab.o SnpRna.tab.o sWords.tab.o
XFrame.o
BlastX_array.o DTerms_lexer.o GBuild362mysql IValue.o
Morgan.o organisms.o PrjLoc_lexer.o PrjSnp_lexer.o
SemNet_array.o snp1272mysql SnpSeq_array.o TValue_array.o
XFrame.tab.o
BlastX_lexer.o DTerms.o GBuild36_dump IValue.tab.o
Morgan.tab.o OTerms_array.o PrjLoc.o PrjSnp.o
SemNet_lexer.o snp127_dump SnpSeq_lexer.o TValue_lexer.o
XGraph_array.o
BlastX.o DTerms.tab.o GBuild_array.o LocMap_array.o
MPanel_array.o OTerms_lexer.o PrjLoc.tab.o PrjSnp.tab.o
SemNet.o SnpDmp_array.o SnpSeq.o TValue.o
XGraph_lexer.o
BlastX.tab.o DValue_array.o GBuild_lexer.o LocMap_lexer.o
MPanelDB2mysql OTerms.o PrjMgr_array.o PubXid_array.o
SemNet.tab.o SnpDmp_lexer.o SnpSeq.tab.o TValue.tab.o
XGraph.o
CBuild_array.o DValue_lexer.o GBuild.o LocMap.o
MPanelDB_dump OTerms.tab.o PrjMgr_lexer.o PubXid_lexer.o
SeqCpG_array.o SnpDmp.o Solane_array.o UniSeq_array.o
XGraph.tab.o
CBuild_lexer.o DValue.o GBuild.tab.o LocMap.tab.o
MPanel_lexer.o PcrMap_array.o PrjMgr.o PubXid.o
SeqCpG_lexer.o SnpDmp.tab.o Solane_lexer.o UniSeq_lexer.o
XidPub_array.o
CBuild.o DValue.tab.o GenHom_array.o lTerms_array.o
MPanel.o PcrMap_lexer.o PrjMgr.tab.o PubXid.tab.o
SeqCpG.o SnpDsq_array.o Solane.o UniSeq.o
XidPub_lexer.o
CBuild.tab.o EcrMap_array.o GenHom_lexer.o lTerms_lexer.o
MPanel.tab.o PcrMap.o PrjPcr_array.o REbase_array.o
SeqCpG.tab.o SnpDsq_lexer.o Solane.tab.o UniSeq.tab.o
XidPub.o
chromosomes.o EcrMap_lexer.o GenHom.o lTerms.o
mReads_array.o PcrMap.tab.o PrjPcr_lexer.o REbase_lexer.o
SeqLog_array.o SnpDsq.o SolRes_array.o uReads_array.o
XidPub.tab.o
codegenerator.jar EcrMap.o GenHom.tab.o lTerms.tab.o
mReads_lexer.o PrjDna_array.o PrjPcr.o REbase.o
SeqLog_lexer.o SnpDsq.tab.o SolRes_lexer.o uReads_lexer.o
xml.o
CTerms_array.o EcrMap.tab.o GenMap_array.o lValue_array.o
mReads.o PrjDna_lexer.o PrjPcr.tab.o REbase.tab.o
SeqLog.o SnpIds_array.o SolRes.o uReads.o
XTerms_array.o
CTerms_lexer.o EWords_array.o GenMap_lexer.o lValue_lexer.o
mReads.tab.o PrjDna.o PrjPrm_array.o REbMap_array.o
SeqLog.tab.o SnpIds_lexer.o SolRes.tab.o uReads.tab.o
XTerms_lexer.o
CTerms.o EWords_lexer.o GenMap.o lValue.o
MSInfo_array.o PrjDna.tab.o PrjPrm_lexer.o REbMap_lexer.o
SeqMap_array.o SnpIds.o SolRun_array.o uTerms_array.o
XTerms.o
CTerms.tab.o EWords.o GenMap.tab.o lValue.tab.o
MSInfo_lexer.o PrjFin_array.o PrjPrm.o REbMap.o
SeqMap_lexer.o SnpIds.tab.o SolRun_lexer.o uTerms_lexer.o
XTerms.tab.o
CytMap_array.o EWords.tab.o IGraph_array.o MCodes_array.o
MSInfo.o PrjFinDB2mysql PrjPrm.tab.o REbMap.tab.o
SeqMap.o SnpMap_array.o SolRun.o uTerms.o
XTobos_array.o
CytMap_lexer.o FeaMap_array.o IGraph_lexer.o MCodes_lexer.o
MSInfo.tab.o PrjFinDB_dump PrjRun_array.o RefRNA_array.o
SeqMap.tab.o SnpMap_lexer.o SolRun.tab.o uTerms.tab.o
XTobos_lexer.o
CytMap.o FeaMap_lexer.o IGraph.o MCodes.o
MTerms_array.o PrjFin_lexer.o PrjRun_lexer.o RefRNA_lexer.o
SeqRep_array.o SnpMap.o SolSum_array.o vector.o
XTobos.o
CytMap.tab.o FeaMap.o IGraph.tab.o MCodes.tab.o
MTerms_lexer.o PrjFin.o PrjRun.o RefRNA.o
SeqRep_lexer.o SnpMap.tab.o SolSum_lexer.o XAlias_array.o
XTobos.tab.o
debug.o FeaMap.tab.o ITerms_array.o moredb.o
MTerms.o PrjFin.tab.o PrjRun.tab.o RefRNA.tab.o
SeqRep.o SNPRefMap362mysql SolSum.o XAlias_lexer.o
XTumls_array.o
DPanel_array.o fid.o ITerms_lexer.o morestdio.o
MTerms.tab.o PrjInt_array.o PrjSeq_array.o SBuild_array.o
SeqRep.tab.o SNPRefMap36_dump SolSum.tab.o XAlias.o
XTumls_lexer.o
DPanel_lexer.o FValue_array.o ITerms.o morestdlib.o
NoteBk_array.o PrjInt_lexer.o PrjSeq_lexer.o SBuild_lexer.o
SeqVar_array.o SnpRna_array.o sWords_array.o XAlias.tab.o
XTumls.o
DPanel.o FValue_lexer.o ITerms.tab.o morestring.o
NoteBk_lexer.o PrjInt.o PrjSeq.o SBuild.o
SeqVar_lexer.o SnpRna_lexer.o sWords_lexer.o XFrame_array.o
XTumls.tab.o
DPanel.tab.o FValue.o IValue_array.o Morgan_array.o
NoteBk.o PrjInt.tab.o PrjSeq.tab.o SBuild.tab.o
SeqVar.o SnpRna.o sWords.o XFrame_lexer.o
ynode.o

> [lindenb@pc-lindenb java]$ find fr/cephb/joperon/core/entities/ -name "*.java"
fr/cephb/joperon/core/entities/XGraph.java
fr/cephb/joperon/core/entities/DValue.java
fr/cephb/joperon/core/entities/GenHom.java
fr/cephb/joperon/core/entities/REbMap.java
fr/cephb/joperon/core/entities/CTerms.java
fr/cephb/joperon/core/entities/SolRun.java
fr/cephb/joperon/core/entities/OTerms.java
fr/cephb/joperon/core/entities/PcrMap.java
fr/cephb/joperon/core/entities/NoteBk.java
fr/cephb/joperon/core/entities/DTerms.java
fr/cephb/joperon/core/entities/SeqMap.java
fr/cephb/joperon/core/entities/lValue.java
fr/cephb/joperon/core/entities/MPanel.java
fr/cephb/joperon/core/entities/XTerms.java
fr/cephb/joperon/core/entities/XidPub.java
fr/cephb/joperon/core/entities/SnpIds.java
fr/cephb/joperon/core/entities/PrjLoc.java
fr/cephb/joperon/core/entities/Morgan.java
fr/cephb/joperon/core/entities/SeqLog.java
fr/cephb/joperon/core/entities/XAlias.java
fr/cephb/joperon/core/entities/DPanel.java
fr/cephb/joperon/core/entities/SolSum.java
fr/cephb/joperon/core/entities/XMLWritable.java
fr/cephb/joperon/core/entities/GenMap.java
fr/cephb/joperon/core/entities/PrjSnp.java
fr/cephb/joperon/core/entities/UniSeq.java
fr/cephb/joperon/core/entities/RefRNA.java
fr/cephb/joperon/core/entities/BlastX.java
fr/cephb/joperon/core/entities/FValue.java
fr/cephb/joperon/core/entities/Solane.java
fr/cephb/joperon/core/entities/PrjDna.java
fr/cephb/joperon/core/entities/MCodes.java
fr/cephb/joperon/core/entities/SeqCpG.java
fr/cephb/joperon/core/entities/uTerms.java
fr/cephb/joperon/core/entities/PrjPrm.java
fr/cephb/joperon/core/entities/REbase.java
fr/cephb/joperon/core/entities/MTerms.java
fr/cephb/joperon/core/entities/SnpMap.java
fr/cephb/joperon/core/entities/IValue.java
fr/cephb/joperon/core/entities/uReads.java
fr/cephb/joperon/core/entities/SeqVar.java
fr/cephb/joperon/core/entities/PubXid.java
fr/cephb/joperon/core/entities/CytMap.java
fr/cephb/joperon/core/entities/GBuild.java
fr/cephb/joperon/core/entities/XFrame.java
fr/cephb/joperon/core/entities/mReads.java
fr/cephb/joperon/core/entities/SBuild.java
fr/cephb/joperon/core/entities/SnpDsq.java
fr/cephb/joperon/core/entities/PrjInt.java
fr/cephb/joperon/core/entities/CBuild.java
fr/cephb/joperon/core/entities/PrjPcr.java
fr/cephb/joperon/core/entities/DnaSeq.java
fr/cephb/joperon/core/entities/XTumls.java
fr/cephb/joperon/core/entities/SnpSeq.java
fr/cephb/joperon/core/entities/XTobos.java
fr/cephb/joperon/core/entities/SeqRep.java

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