New status meeting posted & more on this week’s OpenWorm round-up!
OpenWorm
GENERAL MEETING - 18 June 2014
- Watch the video on YouTube.
- Read the minutes.
New Issues This Week
- Flesh out additional tests to cover full new API revisions opened by slarsonon June 21st
- Change backend to pull from flat file in local memory rather than REST interface opened by slarson on June 21st
- Update readme.md and intro.rst for alpha0.5 branch opened by slarson on June 21st
- Can’t get NEURON to open hoc file generated from PVDL morphology opened by slarson on June 20th
- Alternative: Using PyOpenWorm to read the connectome opened by mwatts15on June 17th
- Add metadata browser back to iOS app opened by slarson on June 16th
Issues Updated This Week
- Create a D3 implementation of the C. elegans connectome HivePlot updated by slarson on June 21st
- Add cell lineage info to PyOpenWorm updated by slarson on June 20th
- implement Neuron.get_neighbors updated by slarson on June 20th
- Using PyOpenWorm to read the connectome updated by slarson on June 20th
- Choose the best method of integration of equations of movement updated bya-palyanov on June 19th
- Augment Sibernetic to receive muscle activations from some neuronal modelupdated by slarson on June 19th
Issues Closed This Week
- Error when trying to use LEMS_Figure2B.xml with jNeuroML closed by rayneron June 19th
- Fixed bugs with upsilons closed by JimHokanson on June 18th
- Worked on locomotion_turns.py closed by JimHokanson on June 17th
- Fixed motion event bugs and completed comparisons of locomotion except bends and turns closed by JimHokanson on June 17th
- From J to M closed by JimHokanson on June 16th
“make sure you get the latest development version”
By Stephen
Jun 22
Interesting Research
By interintelligence
Jun 19
Geppetto 0.1.4 released
By Matteo Cantarelli
Jun 18
Read more at:
- https://groups.google.com/forum/?fromgroups#!forum/openworm-discuss
- https://groups.google.com/forum/#!forum/openworm
OpenWorm @OpenWorm
Jun 21
Nice review of the recent breakthrough in whole-brain activity recording on C. elegans - https://medium.com/the-physics-arxiv-blog/first-movie-of-the-neuronal-activity-in-an-entire-brain-ab315e8ab013 …
OpenWorm @OpenWorm
Jun 20
Meet the Father of Digital Life - http://m.nautil.us/issue/14/mutation/meet-the-father-of-digital-life …
Neil Gunther @DrQz
Jun 19
First Movie of Neuronal Activity in an Entire (C elegans) Brainhttps://medium.com/the-physics-arxiv-blog/ab315e8ab013?source=tw-lo_b79c25022bc1-1403206024810 …
View summary
Geppetto @GeppettoEngine
Jun 18
Geppetto 0.1.4 was released this week, check out the release noteshttps://github.com/openworm/org.geppetto/releases … and the live deploymenthttp://live.geppetto.org
View summary
OpenWorm @OpenWorm
Jun 17
Cracking the Brain’s Codes -http://www.technologyreview.com/featuredstory/528131/cracking-the-brains-codes/ …
Read more at: https://twitter.com/OpenWorm