Geppetto 0.1.6, Journal Club & more on this week’s OpenWorm round-up!
OpenWorm
Geppetto release 0.1.6 is now live and can be found here for download. Want more updates on Geppetto? Get the latest Geppetto biweekly meeting minutes.
Interesting in learning about the scientific method 2.0? Watch the OpenWorm Journal Club to find out.
Check out the latest developments in OpenWorm from our biweekly meeting
Connectomes Big and Small
Aug 11st 2014, 9:24 am
Guest blog: Lav R. Varshney I have been following the OpenWorm project with great interest over the last year and am really …
New Issues This Week
- Enable python setup.py install to work opened by slarson on Aug 16th
- Running setup.py install doesn’t install requirements in Alpha0.5 opened byslarson on Aug 13th
- Problems with OpenCL and installing with Linux opened by wilzh40 on Aug 11th
Issues Updated This Week
- Create a D3 implementation of the C. elegans connectome HivePlot updated by ashishkadam on Aug 15th
- Implement muscle.innervatedBy() in alpha0.5 updated by mwatts15 on Aug 14th
- Create script to go from feature file to sample input data for creating feature file updated by slarson on Aug 13th
- Create HDF5 scripts and documentation updated by slarson on Aug 13th
- Update NeuroML2 version of muscle model to match Neuron version updated by slarson on Aug 12th
- Update the DB with new circuit information updated by slarson on Aug 11th
- Add RDFS and OWL reasoning to RDF graph updated by slarson on Aug 11th
Issues Closed This Week
- Simplify installation for alpha0.5 closed by slarson 5 on Aug 17th
- Improved install procedure closed by slarson 5 on Aug 17th
- Create loader for worm particles and membrane triangulation closed bygitmado on Aug 16th
- Create script to go from worm position and contour to .mat feature file closed by JimHokanson on Aug 14th
- Add gitignore file targeted at Visual Studio closed by gitmado on Aug 13th
- Development closed by skhayrulin on Aug 13th
- File format for saving fluid simulation output closed by slarson on Aug 13th
- Fixed eccentricity and setup initial code for change to config approach closed by JimHokanson on Aug 12th
- Investigate WormSim user management options closed by mlolson on Aug 11th
Re: [openworm-discuss] Genohacking C. elegans
By Stephen, 6 posts 17 views
Aug 17
Visualizing data using d3js
By Ashish Kadam, 4 posts 34 views
Aug 17
SciUnit: getting operational
By Stephen, 4 posts 11 views
Aug 15
Stanford Light Field Microscope Project
By John Ballentine, 2 posts 17 views
Aug 14
Openworm engineering blog
By Matt Olson, 4 posts 12 views
Aug 14
general meeting
By Joe Landau, 2 posts 10 views
Aug 13
Wanted: NEURON and Brian recordings
By Johannes Rieke, 4 posts 21 views
Aug 10
Read more at:
- https://groups.google.com/forum/?fromgroups#!forum/openworm-discuss
- https://groups.google.com/forum/#!forum/openworm
OpenWorm @OpenWorm
Aug 15
OpenWorm Journal Club is Live!https://plus.google.com/b/117948341754627144949/events/c4s7e1g676dgl909r8819oklcso … Scientific Method 2.0
OpenWorm @OpenWorm
Aug 13
Not a worm muscle but neat anyhow! http://i.imgur.com/fgRP0H7.gif
OpenWorm @OpenWorm
Aug 13
#openworm status update is LIVE - http://youtu.be/bkwFTyRxHXU
Royal Irish Academy @RIAdawson
Aug 12
Letter from Crick and Watson to Erwin Schrodinger dated 12 Aug 1953 re: What is Life? & the impact on their careers pic.twitter.com/egMBNcUyR5
Read more at: https://twitter.com/OpenWorm