Inventory of Movement-Analysis-related repositories

[Michael Currie]

Happy Holidays,

I was hoping to develop a list of all the repositories on GitHub containing code related to Movement Analysis.  Here's what I know about:

OpenWorm Port of Schafer Lab's Worm Analysis Toolbox 1.3.4:

https://github.com/openworm/SegWorm  (original MATLAB code, static)

https://github.com/JimHokanson/SegwormMatlabClasses  (Jim's MATLAB fork, now static)

https://github.com/openworm/open-worm-analysis-toolbox  (active Python port; formerly movement_validation)

Cloud Computing:

https://github.com/openworm/movement_validation_cloud, forked from

https://github.com/joebowen/movement_validation_cloud

Worm Tracker File Format Specification and Parser:

https://github.com/openworm/tracker-commons

https://github.com/openworm/biological_data   (placeholder repo to discuss worm video data)

André Brown's "Eigenworms" Code:

https://github.com/aexbrown/Motif_Analysis   (Deprecated in favour of Behavioural_Syntax below)

https://github.com/aexbrown/Behavioural_Syntax   (in MATLAB)

https://github.com/AidanRocke/behavioral_syntax  (Aidan Rocke's Python port)

Brown Lab Multiworm Tracking Code

https://github.com/Behavioural-Genomics/tracking   (not sure what this is, looks stale?)

https://github.com/ver228/Multiworm_Tracking    (Avelino's work)

https://github.com/KezhiLi/Tracking_Hypo   (Kezhi's work; the computer vision code)

Question for Avelino and Kezhi: does Multiworm_Tracking supercede Tracking_Hypo now, or are they both intended to work together?

Please let me know if I'm missing any repositories.  Just want to get the lay of the land.

Thanks,

Michael