I ran a case as you sent it and then I moved the wings and tail surfaces to intersect the fuselage. Both were able to work without a lot of trouble.
I did notice that you are running in stability mode. This will cause 10 runs for each flight condition -- it will perturb all the conditions (7) to find derivatives, including the control surfaces (3).
If you need that, it is fine, but you don't want to turn that on until you have a basic case working first.
When you have trouble, please post a case that is giving you problems and tell us exactly what you're doing so we can replicate exactly what you're attempting.
You're going to want more spanwise resolution on the tail. You probably also want to select the option to 'Rotate Foils for Dihedral'. Similarly, for a V-tail, people often use zero dihedral, but rotate the wings about the X axis. It depends on exactly what you want.
Rob