Yes, that is certainly one way to do the bookkeeping. Having survived the Starship program, we used the entire wing area, including the fuel tanks in the leading-edge strake. That added considerable area beyond the basic area the trapezoid shape of the main part of the wing. While the VariEze does not have as large a strake, it still is sizeable and there is also an extension behind the trap wing. When you use the full area as opposed to the trapezoid area, the aircraft lift coefficients are are reduced and do not compare well with other aircraft, or even the section coefficients on the airfoils of the outboard wing.
As long as you use a consistent reference area for all your aircraft coefficients, it will all work out. But you may have issues when you try to compare with conventional aircraft, particularly for items like CLmax.
And as for a glider, there is a reason the only one Rutan Solitaire was built. The canard configuration is not a very good solution for a glider. The performance was poor and the ability to turn tight circles in small thermals was not on par with traditional designs. Even a flying wing is better.
And for a powered aircraft, the fuel needs to be near the CG, and that is between the wings. So it requires extra wetted area for strakes, unless the fuel is in the fuselage, where it displaces people or payload. I stand by the comment I've made for years, the best place for a canard is on on your competitor's airplane.
..... Neal