Thank you Brandon for having a look!
I made the model in 3.48.0 and upgraded to 3.48.2 which i should have mentioned, and indeed for me it also crashes upon startup, however, i found that when i run an analysis on another file/model, (keeping the wave drag analysis open) then switch to that model and run wave drag, there is no crash. However, the flow-through error persist.
I have done as you said and made a brand new inlet from scratch without the engine definition parameters, however, the error also occurs here unfortunately, perhaps I am sitll doing something wrong? I have made a new inlet on another model of mine, which should not crash the application when starting the wave drag analysis. I have made this in 3.48.2. I still get the error and it removes the inlet from the model in the mesh so my assumption is that it is the inlet that is still the problem.
I have attached the new model with the new inlet below.
