I believe it is harmless.
There is a 1D solver that runs to set the lengths of the control surfaces. I believe on startup, the surface isn't ready and it doesn't work properly. Once the model is set up, it works fine.
However, I see you used three separate landing gear Geoms to represent your gear. The Gear component is designed so you use a single landing gear component to represent all three points of contact. The mains can easily be accomplished by turning on symmetry for that Bogie. You can add a separate Bogie for the Nose wheel. The various analyses associated with landing gear won't work with them as separate components.
Rob