Number of studies

[François Michonneau]

Hi all,

Is there a way to know how many studies and how many trees are
available in the curator interface?

Thanks!
-- François

[Karen Cranston]

We don't provide that info in the webapp (although we probably should!). There are at least three ways to get that info, though:

1. A python script in peyotl that counts studies + trees (requires installation and setup of peyotl library):

https://github.com/OpenTreeOfLife/peyotl/blob/master/examples/phylesystem/count_trees.py

2. Using the find_studies and find_trees API calls:

https://github.com/OpenTreeOfLife/opentree/wiki/Open-Tree-of-Life-APIs#studies

3. Using grep on a clone of the phylesystem-1 repo:

https://github.com/OpenTreeOfLife/phylesystem-1

If you really just want to know the answer to this question right now, here is the output of that peyotl script:

3399 = # studies
152 = # studies without any trees
7755 = # trees total
61 = maximum # trees in any study (pg_2607)

Cheers,

Karen

  -- François

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[François Michonneau]

Perfect, thanks!