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Open Tree of Life - Software Development
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Emily Jane McTavish
6/7/21
Re: [opentreeoflife] Choosing specific ("best") backbone phylogeny?
Hi Christine, Congrats on the new barnacle classification! There are a few options for incorporating
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Re: [opentreeoflife] Choosing specific ("best") backbone phylogeny?
Hi Christine, Congrats on the new barnacle classification! There are a few options for incorporating
6/7/21
Mark Holder
8/7/18
discontinuing v2 of API and interested in input about feature for v4
Hi folks, Below are a couple of notes about Open Tree of Life APIs for people who interact with Open
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discontinuing v2 of API and interested in input about feature for v4
Hi folks, Below are a couple of notes about Open Tree of Life APIs for people who interact with Open
8/7/18
Stephen Smith
5/31/17
Meeting
Hey folks Sorry I missed the meeting today. I have been traveling and also putting together my tenure
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Meeting
Hey folks Sorry I missed the meeting today. I have been traveling and also putting together my tenure
5/31/17
Stephen Smith
,
Karen Cranston
2
2/7/17
taxonomy manuscript
Happy to have some feedback on the current version - just make a branch off master and send the edits
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taxonomy manuscript
Happy to have some feedback on the current version - just make a branch off master and send the edits
2/7/17
Stephen Smith
9/26/16
today
unfortunately not going to be able to make the call today, but joseph will be there and has some
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today
unfortunately not going to be able to make the call today, but joseph will be there and has some
9/26/16
Karen Cranston
1/15/16
communication changes
Hello opentree mailing list subscribers, We've made some changes to our communication channels
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communication changes
Hello opentree mailing list subscribers, We've made some changes to our communication channels
1/15/16
Karen Cranston
1/13/16
meeting today @2pm EST
Hangout today at 2 pm. Agenda here, and do add items that you think need discussing: https://docs.
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meeting today @2pm EST
Hangout today at 2 pm. Agenda here, and do add items that you think need discussing: https://docs.
1/13/16
Jonathan A Rees
1/13/16
conflict analysis rough notes for discussion at today's hangout
This might be a starting point for a conflict analysis discussion today (2pm) https://docs.google.com
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conflict analysis rough notes for discussion at today's hangout
This might be a starting point for a conflict analysis discussion today (2pm) https://docs.google.com
1/13/16
Karen Cranston
1/11/16
taxonomy browser
We have just released a browser for OTT. This post contains links: http://blog.opentreeoflife.org/
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taxonomy browser
We have just released a browser for OTT. This post contains links: http://blog.opentreeoflife.org/
1/11/16
Karen Cranston
1/7/16
weekly meetings 2pm Wed this term
Thanks to everyone that responded to the poll. 2 pm EST Wednesdays is the only time that works for
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weekly meetings 2pm Wed this term
Thanks to everyone that responded to the poll. 2 pm EST Wednesdays is the only time that works for
1/7/16
Karen Cranston
, …
Stephen Smith
4
1/4/16
hangout this afternoon
Ok, thanks Stephen. We will still meet today. Can everyone can fill out this poll (times for a
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hangout this afternoon
Ok, thanks Stephen. We will still meet today. Can everyone can fill out this poll (times for a
1/4/16
Stephen Smith
12/7/15
meeting today
fyi, don't wait for me today. going to be a late because i have grad student prelim meeting
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meeting today
fyi, don't wait for me today. going to be a late because i have grad student prelim meeting
12/7/15
Jonathan A Rees
,
Mark Holder
2
11/25/15
Switching from http: to https:
Hi Jonathan, Thanks for the announcement and summary of the implications. I say: go for it. The
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Switching from http: to https:
Hi Jonathan, Thanks for the announcement and summary of the implications. I say: go for it. The
11/25/15
Stephen Smith
11/16/15
today
hey folks, i have NSF things all day today and tomorrow so i won't be on the call. will check the
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today
hey folks, i have NSF things all day today and tomorrow so i won't be on the call. will check the
11/16/15
Nico Franz
,
Mark Westneat
2
11/12/15
Latest talk on concept taxonomy -- FuturePhy workshop proposal?
Hi Nico, thanks for your query- yes we would be interested in your proposal on Phytophaga, dealing
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Latest talk on concept taxonomy -- FuturePhy workshop proposal?
Hi Nico, thanks for your query- yes we would be interested in your proposal on Phytophaga, dealing
11/12/15
Jonathan A Rees
,
Stephen Smith
3
11/10/15
re monday's hangout
Thanks for putting this together. I didn't speak up but I am fine with your proposal (ie, I have
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re monday's hangout
Thanks for putting this together. I didn't speak up but I am fine with your proposal (ie, I have
11/10/15
Jonathan A Rees
,
Yan Wong
4
11/10/15
site update in progress over the weekend
Thanks! Fixed. On Tue, Nov 10, 2015 at 7:58 AM, Yan Wong <hyan...@googlemail.com> wrote: On
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site update in progress over the weekend
Thanks! Fixed. On Tue, Nov 10, 2015 at 7:58 AM, Yan Wong <hyan...@googlemail.com> wrote: On
11/10/15
Jonathan A Rees
11/6/15
date format
I'd like to put in another plea for everyone to use ISO 8601 whenever writing a date that might
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date format
I'd like to put in another plea for everyone to use ISO 8601 whenever writing a date that might
11/6/15
Jonathan A Rees
2
11/3/15
devapi.opentreeoflife.org is down - hardware problem
devapi.opentreeoflife.org and files.opentreeoflife.org appear to be operational again in their
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devapi.opentreeoflife.org is down - hardware problem
devapi.opentreeoflife.org and files.opentreeoflife.org appear to be operational again in their
11/3/15
Karen Cranston
,
Stephen Smith
2
11/2/15
meeting today at 2 pm EST
Hi Karen I have something right before the meeting but will try to be there on time. If not, start
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meeting today at 2 pm EST
Hi Karen I have something right before the meeting but will try to be there on time. If not, start
11/2/15
Jonathan A Rees
,
Karen Cranston
3
11/2/15
id registry prototype
What I have is that about .8% of plant genera in OTT 2.8, as identified by OTT id, require new
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id registry prototype
What I have is that about .8% of plant genera in OTT 2.8, as identified by OTT id, require new
11/2/15
Jonathan A Rees
, …
Jim Allman
6
10/26/15
License/waiver options in curator app
Sorry, I forgot there was a pulldown under "These data already have an applied waiver or license
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License/waiver options in curator app
Sorry, I forgot there was a pulldown under "These data already have an applied waiver or license
10/26/15
Karen Cranston
10/26/15
meeting today 2 pm EDT
Agenda in the regular place. Main items: * fungal synthesis * serving trees from the new pipeline *
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meeting today 2 pm EDT
Agenda in the regular place. Main items: * fungal synthesis * serving trees from the new pipeline *
10/26/15
Joseph Brown
, …
Jonathan A Rees
13
10/23/15
synth tree "version 4.0"
Ok, it is there now, named "Life_v4.0_ott2.9draft12_synth_15October2015.tre". JWB. On 23
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synth tree "version 4.0"
Ok, it is there now, named "Life_v4.0_ott2.9draft12_synth_15October2015.tre". JWB. On 23
10/23/15
Jonathan A Rees
10/22/15
always prefer opentree user to admin or root on the servers
Attention open tree developers: There was a problem on api.opentreeoflife.org today: The oti process
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always prefer opentree user to admin or root on the servers
Attention open tree developers: There was a problem on api.opentreeoflife.org today: The oti process
10/22/15
Karen Cranston
10/19/15
meeting today at 2 pm
Agenda & hangout link in the normal place: https://docs.google.com/document/d/1bw_ePrR1j7dhou-
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meeting today at 2 pm
Agenda & hangout link in the normal place: https://docs.google.com/document/d/1bw_ePrR1j7dhou-
10/19/15
Peter Midford
,
Stephen Smith
2
10/14/15
taxomachine issue 97 question
I don't know if you mean other engineering approaches that might be specific to neo4j or
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taxomachine issue 97 question
I don't know if you mean other engineering approaches that might be specific to neo4j or
10/14/15
Karen Cranston
10/12/15
meeting today at 2 pm EDT
Agenda in the doc. Add other items that you want to discuss. https://docs.google.com/document/d/
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meeting today at 2 pm EDT
Agenda in the doc. Add other items that you want to discuss. https://docs.google.com/document/d/
10/12/15
Mark Holder
,
Jonathan A Rees
2
10/10/15
questions about tip pruning in synth pipeline
Your proposed solutions favor lower (more specific) taxa over higher ones, when there is competition
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questions about tip pruning in synth pipeline
Your proposed solutions favor lower (more specific) taxa over higher ones, when there is competition
10/10/15
Brian O'Meara
10/8/15
Phylotastic status
Just FYI: Phylotastic is working to use OpenTree's global tree and its repository of study trees
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Phylotastic status
Just FYI: Phylotastic is working to use OpenTree's global tree and its repository of study trees
10/8/15