Something perhaps worth adding to this topic...
In addition to the general issues in almost every software product with confusion between Saving and Rendering there is also the matter of Exporting.
Here's what I think should generally be considered when using those terms.
Saving
Saving is when files are stored in a native format of the program.
Anything saved out can be reopened in the program.
Exporting
Export is generally used for storing files in a format used with other external programs.
As opposed to direct opening, files in these formats must generally be Imported into the program.
The reason is that some translation is occurring in the process that is specific to the other program(s) that use that file format.
That translated data is generally is not optimal for use with the software but is refined enough for use.
The primary issue is that the developers of the program don't have any control over the format used by those other external programs so if that format is updated new importers/exporters must be created in order to maintain compatibility.
Rendering
Rendering is generally a term used for storing data from the program into an image format.
That image or image sequence is lossy in that it does not store the data required to restore the original data manipulated in the program.
Rendering literally means to rip apart and in this case that's what it does in order to present the required data in the targeted image format.
A perfect solution might be a format (or container) that can store data in a lossless format where the original setup can be recovered fully.
I note that OpenToonz is designed for use with Subversion (SVN) and that is promising.
There are also some formats on the cutting edge that might be considered. For instance, the MOX format by Brendon Bolles.
While MOX/NOX as it stands right now doesn't store any of the originating data outside of the rendered images for display as video it is a container that could be extended to do just that.
I'm sure other formats... even .ZIP might be shoehorned in such a way to work.
Bottom line: The terms Save, Export and Render are often misunderstood. If they could become more unified... or better understood... that would streamline everyone's workflow.