I have used the autocenter successfully a few times now. Even then, it's anything but foolproof and the process fails many times. It's a shame that it's impossible to manually place tracking points and that you have to rely on specific presets. For now I still mostly use Natron for this process, as it's quite simple and fast.
Anyways, for whatever reason, the DPI of the level HAS to be set at exactly 300 DPI. It won't work otherwise. So select the level on the timeline, go to Level > Level Settings > and change the DPI to 300.
For me it works with standard ACME peg bar. Still, many times it fails on a few random drawings, which I have to align manually.