This is an unfortunate result of the update.
Those Levels should be in your old Stuff directory (C:\OpenToonz 1.0 stuff) whereas the current Project is pointing to the new directory (C:\OpenToonz 1.1 stuff).
There are several ways to get those links reconnected but if you only have a few missing you can click on that (red) cell, navigate to your old directry and locate the files. The files are very likely either in a project root you created or (more likely) in the Sandbox inside the Drawings folder.