Fwd: seminars today?

[Kevin Rue]

Hi all,

Apologies for the late reminder..

There is an OpenSequencing meeting planned at 2pm today. after the seminar.

Catherine should have some news about her RNAseq, and I have put together a few slides about some code I wrote recently.

Best,

 Kevin

---------- Forwarded message ----------
From: Anthony Chubb <anthon...@ucd.ie>
Date: 4 November 2013 11:53
Subject: Re: seminars today?
To: BIOINF-...@listserv.heanet.ie


Thanks Ben,

I'll provide coffee at 12:45 again. If anyone has any pressing issues re the programme please chat to me then.

I'll be relocating to Conway soon, so you'll be able to find my desk more easily soon.

ciao,
Ant

On 04/11/2013 11:38, Benedikt Minke wrote:

Yes, will be there, sent abstract last week

-----Original Message-----
From: Anthony Chubb [mailto:anthon...@ucd.ie]
Sent: 04 November 2013 11:31
To: Benedikt Minke; Cormac McCarthy
Subject: seminars today?

Hi guys,

I'm just checking that you're on for seminars today...?

thanks,
Ant

--
Kévin RUE-ALBRECHT
Computational Infection Biology PhD Programme
University College Dublin
Ireland
http://fr.linkedin.com/pub/k%C3%A9vin-rue/28/a45/149/en

[Kevin Rue]

Hi all,

As promised, here are the links to the three publications related to the "Regulatory Impact Factor" analysis by Hudson et al.

• Beyond differential expression: the quest for causal mutations and effector molecules. (http://www.ncbi.nlm.nih.gov/pubmed/22849396)
  
• Regulatory impact factors: unraveling the transcriptional regulation of complex traits from expression data. (http://www.ncbi.nlm.nih.gov/pubmed/20144946)
  
• A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation. (http://www.ncbi.nlm.nih.gov/pubmed/19412532)
  

And the link to my GitHub account: https://github.com/kevinrue

You will find the R package (HudsonRIF) and the supplemental data they published as an example test dataset (HudsonRIFdata). Although as I said, the test data does not reproduce their published results.

Note that I have done some additions to the raw code since the latest release. Those of you who know how to build a package from source should checkout the repository and build the package themselves (R studio does it easily).

The others could download the latest release and install it as a regular R package from the tarball.

Have fun !

Kevin