Modality not associated

[Marco Ovidi]

Hi, I have a mammography that was not recognized. puts it in others. if I try to select it and do update, in the drop-down menu it only offers dx-rf-dual. I would like to include it in a mammography. the brand is IMS GIOTTO.

[Ed McDonagh]

Hi Marco

Are you importing mammography images or RDSRs?

Do you have an example you can send directly to me - ideally a QA study, or if not something that is anonymised?

Then I should be able to work out why it isn't being imported correctly. 

Ed

On Tue, 23 Apr 2024, 13:00 Marco Ovidi, <m.o...@grupposancarlo.it> wrote:

Hi, I have a mammography that was not recognized. puts it in others. if I try to select it and do update, in the drop-down menu it only offers dx-rf-dual. I would like to include it in a mammography. the brand is IMS GIOTTO.

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[Marco Ovidi]

i don't know exactly at moment i follow the guide and i execute this:

#!/bin/bash
ONEHOURAGO=$(date -d "1 hour ago" "+%Y-%m-%d")

# Docker on Linux
sudo /usr/bin/docker-compose -f /tmp/openrem-docker-a3722dd2f040/docker-compose.yml exec -T openrem openrem_qr.py 1 1 -mg -ct -dx -f $ONEHOURAGO -t $ONEHOURAGO  -e "Imported"

in  task administration i can see import_dx succes and import_rdsr with this error 

Traceback (most recent call last): File "/home/app/openrem/remapp/tools/background.py", line 148, in run_as_task func(*args, **kwargs) File "/home/app/openrem/remapp/extractors/rdsr.py", line 623, in rdsr _rdsr2db(dataset) File "/home/app/openrem/remapp/extractors/rdsr.py", line 423, in _rdsr2db _rdsr_rrdsr_contents(dataset, g) File "/home/app/openrem/remapp/extractors/rdsr.py", line 123, in _rdsr_rrdsr_contents projectionxrayradiationdose(dataset, g, "projection") File "/home/app/openrem/remapp/extractors/rdsr_methods.py", line 1759, in projectionxrayradiationdose _irradiationeventxraydata(cont, proj, dataset) File "/home/app/openrem/remapp/extractors/rdsr_methods.py", line 780, in _irradiationeventxraydata for cont2 in cont.ContentSequence: File "/usr/local/lib/python3.10/site-packages/pydicom/dataset.py", line 834, in __getattr__ return object.__getattribute__(self, name) AttributeError: 'Dataset' object has no attribute 'ContentSequence'

and in unit display name and modality type configuration i can see in the voice other my mammography.

if you want i can send you a study of mammography but i can't anonymize the study because my pacs do not permit this action.

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[Ed McDonagh]

It looks like there is an irradiation event label without a label type. I think it depends on what that label is as to whether that is ok! 

It would be really helpful if I could get hold of an RDSR, but I don't want to have any patient information.

Are you able to create a study on the system and send it to PACS then query for it so that it doesn't have patient details in it?

Alternatively, if you have the RDSR on your computer, you can use a DICOM dump utility to put all the content in a text file, then remove the first section with the patient information in and send me the rest directly to my email? This is not ideal, as I won't be able to test it, but I would be able to see the structure and content of those sequences.

Kind regards

Ed

[Ed McDonagh]

I have created https://bitbucket.org/openrem/openrem/issues/1020/import-of-ims-giotto-mammography-rdsr to track this.

[Marco Ovidi]

thanks for assistance. I have another identical mammogram in another location but with more updated software and that is recognised. Now I have asked for an update on this too to see if it solves the problem. Will update.

[Ed McDonagh]

Ok, that is good to hear. It would still be really helpful to get an RDSR, or at least see the content, to ensure that OpenREM still imports them correctly on the old version of the Giotto software.

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[Marco Ovidi]

yesterday the maintenance company updated the mammograph, but I continue to have the mammograph in "other" as you can see in the attachment. I managed to extract the study making it anonymous. I'll send you the anonymized dcm and dicom tags in .txt wetransfer together with the rdsr. Thank you