problem compiling with hdf5

[King]

Hello everyone

i tried compiling openmc with hdf5 support. i downloaded HDF5 1.8.14. installed it with instruction given in section 2.2.1 of installation. used the command to 

export FC=h5pfc

then this error happened. 

[ 46%] Building Fortran object CMakeFiles/openmc.dir/hdf5_interface.F90.o

/home/khurrum/Work/openmc/src/hdf5_interface.F90:1791.47:

         mem_space_id=dspace, xfer_prp = plist)

                                               1

Error: There is no specific subroutine for the generic 'h5dread_vl_f' at (1)

/home/khurrum/Work/openmc/src/hdf5_interface.F90:1737.45:

         mem_space_id=dspace, xfer_prp=plist)

                                             1

Error: There is no specific subroutine for the generic 'h5dwrite_vl_f' at (1)

/home/khurrum/Work/openmc/src/hdf5_interface.F90:779.47:

         mem_space_id=dspace, xfer_prp = plist)

                                               1

Error: There is no specific subroutine for the generic 'h5dread_vl_f' at (1)

/home/khurrum/Work/openmc/src/hdf5_interface.F90:737.29:

         mem_space_id=dspace)

                             1

Error: There is no specific subroutine for the generic 'h5dwrite_vl_f' at (1)

make[3]: *** [CMakeFiles/openmc.dir/hdf5_interface.F90.o] Error 1

make[2]: *** [CMakeFiles/openmc.dir/hdf5_interface.F90.o.provides] Error 2

make[1]: *** [CMakeFiles/openmc.dir/all] Error 2

make: *** [all] Error 2

i am working at ubuntu 12.04 LTS. your help in this regard will be highly appreciated.

[Bryan Herman]

These are my commands to build mpich and parallel hdf5:

  # Build MPICH
  wget http://www.mpich.org/static/downloads/3.1.3/mpich-3.1.3.tar.gz
  tar -xzvf mpich-3.1.3.tar.gz
  cd mpich-3.1.3
  ./configure --prefix=/opt/mpich/3.1.3-gnu
  make -j
  make install
  cd ..

  # Build PHDF5
  wget http://www.hdfgroup.org/ftp/HDF5/current/src/hdf5-1.8.14.tar.gz
  tar -xzvf hdf5-1.8.14.tar.gz
  cd hdf5-1.8.14
  CC=/opt/mpich/3.1.3-gnu/bin/mpicc FC=/opt/mpich/3.1.3-gnu/bin/mpif90 \
     ./configure \
     --prefix=/opt/phdf5/1.8.14-gnu --enable-fortran \
     --enable-fortran2003 --enable-parallel
  make -j
  make install
  cd ..

Let me know if this gives you problems.

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[King]

I have successfully installed mpich and hdf5 with parallel option enabled. The error I posted is during installation of openmc with parallel enabled Fortran wrapper of hdf5

[King]

this is the output of cmake showing that it detects the h5pfc fortran wrapper but don't know what is the problem with the compilation

-- The Fortran compiler identification is GNU

-- Check for working Fortran compiler: /home/khurrum/Downloads/hdf5-1.8.14/build/bin/h5pfc

-- Check for working Fortran compiler: /home/khurrum/Downloads/hdf5-1.8.14/build/bin/h5pfc  -- works

-- Detecting Fortran compiler ABI info

-- Detecting Fortran compiler ABI info - done

-- Checking whether /home/khurrum/Downloads/hdf5-1.8.14/build/bin/h5pfc supports Fortran 90

-- Checking whether /home/khurrum/Downloads/hdf5-1.8.14/build/bin/h5pfc supports Fortran 90 -- yes

-- Detected parallel HDF5 wrapper: /home/khurrum/Downloads/hdf5-1.8.14/build/bin/h5pfc

-- Found PythonInterp: /usr/bin/python (found version "2.7.3")

-- Configuring done

-- Generating done

-- Build files have been written to: /home/khurrum/Work/openmc/src

[Paul Romano]

When you built HDF5, did you use the --enable-fortran and --enable-fortran2003 options?

Paul

--

[King]

Yes I did. As in my last post I have shown output of cmake which detected f5pfs so this means Fortran was enabled. I have run some examples of hdf5 to check its installation and they are working fine