Link error when linking CXX shared module _hdf5.so

[Ikyo Coyan]

When I install opengm and run make command(I want the QPBO and PYTHON part in opengm):

I encountered this:

[ 35%] Linking CXX shared module _hdf5.so

 

Undefined symbols for architecture x86_64:

  "_PyEval_InitThreads", referenced from:

      init_module__hdf5() in hdf5.cpp.o

  "_Py_Initialize", referenced from:

      init_module__hdf5() in hdf5.cpp.o

  "__Py_NoneStruct", referenced from:

      __GLOBAL__sub_I_hdf5.cpp in hdf5.cpp.o

      boost::python::detail::caller_arity<3u>::impl<void (*)(opengm::GraphicalModel<double, opengm::Adder, opengm::meta::TypeList<opengm::ExplicitFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsNFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsGFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedAbsoluteDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedSquaredDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::SparseFunction<double, unsigned long, unsigned long, std::__1::map<unsigned long, double, std::__1::less<unsigned long>, std::__1::allocator<std::__1::pair<unsigned long const, double> > > >, opengm::meta::TypeList<opengm::functions::learnable::LPotts<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::functions::learnable::LUnary<double, unsigned long, unsigned long>, opengm::meta::ListEnd> > > > > > > > >, opengm::DiscreteSpace<unsigned long, unsigned long> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&), boost::python::default_call_policies, boost::mpl::vector4<void, opengm::GraphicalModel<double, opengm::Adder, opengm::meta::TypeList<opengm::ExplicitFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsNFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsGFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedAbsoluteDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedSquaredDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::SparseFunction<double, unsigned long, unsigned long, std::__1::map<unsigned long, double, std::__1::less<unsigned long>, std::__1::allocator<std::__1::pair<unsigned long const, double> > > >, opengm::meta::TypeList<opengm::functions::learnable::LPotts<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::functions::learnable::LUnary<double, unsigned long, unsigned long>, opengm::meta::ListEnd> > > > > > > > >, opengm::DiscreteSpace<unsigned long, unsigned long> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&> >::operator()(_object*, _object*) in pyHdf5.cxx.o

      boost::python::detail::caller_arity<3u>::impl<void (*)(opengm::GraphicalModel<double, opengm::Adder, opengm::meta::TypeList<opengm::ExplicitFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsNFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsGFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedAbsoluteDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedSquaredDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::SparseFunction<double, unsigned long, unsigned long, std::__1::map<unsigned long, double, std::__1::less<unsigned long>, std::__1::allocator<std::__1::pair<unsigned long const, double> > > >, opengm::meta::TypeList<opengm::functions::learnable::LPotts<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::functions::learnable::LUnary<double, unsigned long, unsigned long>, opengm::meta::ListEnd> > > > > > > > >, opengm::DiscreteSpace<unsigned long, unsigned long> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&), boost::python::default_call_policies, boost::mpl::vector4<void, opengm::GraphicalModel<double, opengm::Adder, opengm::meta::TypeList<opengm::ExplicitFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsNFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::PottsGFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedAbsoluteDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::TruncatedSquaredDifferenceFunction<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::SparseFunction<double, unsigned long, unsigned long, std::__1::map<unsigned long, double, std::__1::less<unsigned long>, std::__1::allocator<std::__1::pair<unsigned long const, double> > > >, opengm::meta::TypeList<opengm::functions::learnable::LPotts<double, unsigned long, unsigned long>, opengm::meta::TypeList<opengm::functions::learnable::LUnary<double, unsigned long, unsigned long>, opengm::meta::ListEnd> > > > > > > > >, opengm::DiscreteSpace<unsigned long, unsigned long> >&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&, std::__1::basic_string<char, std::__1::char_traits<char>, std::__1::allocator<char> > const&> >::operator()(_object*, _object*) in pyHdf5.cxx.o

      __GLOBAL__sub_I_pyHdf5.cxx in pyHdf5.cxx.o

ld: symbol(s) not found for architecture x86_64

clang: error: linker command failed with exit code 1 (use -v to see invocation)

make[2]: *** [src/interfaces/python/opengm/hdf5/_hdf5.so] Error 1

make[1]: *** [src/interfaces/python/opengm/hdf5/CMakeFiles/_hdf5.dir/all] Error 2

I searched a lot while it seems nobody had met this before.... Is there any one can help? 

Best wishes.