New snapshot and docker container available

[Alan Garny]

Dear all,

This is just to let you know that a new OpenCOR snapshot and docker container have been released. Among other things, this snapshot addresses a GUI glitch on macOS (see here) and an issue with reloading a remote SED-ML file (see here).

Also, it is now possible to export a CellML file to C, FORTRAN 77, MATLAB and Python directly from OpenCOR (either through its GUI or from the command line) (see here, here, here, and here, respectively). This feature has always been available, it's just that one first had to provide a user-defined format for C, FORTRAN 77, MATLAB or Python (format that was shipped with OpenCOR). It was done that way because those exports rely on the CellML API and that there are some known issues with it. So, we didn't want to encourage the use of that feature. Yet, people need it and seem to be happy enough with it. So, for convenience, it is now possible to do those exports directly.

As mentioned before, please consider this snapshot as a beta version for OpenCOR 0.7. So, please, give it a try and don’t hesitate to report any issue that you might have with it.

Best regards, Alan.

[Alan Garny]

Sorry, one more thing:

The user documentation on the OpenCOR website can be found at https://opencor.ws/user/index.html. However, this refers to the user documentation for the latest official version of OpenCOR which... we all know is now quite old.

At some point, we mentioned that the user documentation for the latest snapshot of OpenCOR could be found somewhere on Read the Docs. However, not only it wasn't rendered the same as on the OpenCOR website, but it wasn't advertised as such.

Now, 

Alan

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From: openco...@googlegroups.com <openco...@googlegroups.com> on behalf of Alan Garny <a.g...@auckland.ac.nz>
Sent: Tuesday, 14 September 2021 3:42 PM
To: openco...@googlegroups.com <openco...@googlegroups.com>
Subject: [OpenCOR Users] New snapshot and docker container available

 

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[Alan Garny]

Sorry, one more thing:

The user documentation on the OpenCOR website can be found at https://opencor.ws/user/index.html. However, this refers to the user documentation for the latest official version of OpenCOR which... we all know is now quite old.

At some point, we mentioned that the user documentation for the latest snapshot of OpenCOR could be found somewhere on Read the Docs. However, not only it wasn't rendered the same as on the OpenCOR website, but it wasn't advertised as such.

Now, the user documentation for the latest snapshot can be found at https://opencor.github.io/, as advertised on the official user documentation and on the downloads page.

Alan

P.S.: hopefully, I haven't forgotten anything else!

---

From: Alan Garny

Sent: Tuesday, 14 September 2021 3:42 PM
To: openco...@googlegroups.com <openco...@googlegroups.com>

Subject: New snapshot and docker container available

 

[Alan Garny]

Dear all,

 

This is just to let you know that a new OpenCOR snapshot and docker container have been released.

This snapshot:

• improves the Windows installer (see here);
• fixes a couple of issues with the export of a CellML 1.1 model to CellML 1.0 (see here and here); and
• addresses a GUI issue with the Simulation Experiment view (see here).