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yupu liang
5/26/23
Seleventa.com and 149.202.237.110
Hi, this is Yupu. I joined Alexion last September. We own Selventa knowledge base and I realized that
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Seleventa.com and 149.202.237.110
Hi, this is Yupu. I joined Alexion last September. We own Selventa knowledge base and I realized that
5/26/23
Vasundra Touré
5/7/20
BEL proposal BEP-0013: Update annotation handling
Hi, This BEP proposes a way to better handle annotations in BEL script. First, it updates the syntax
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BEL proposal BEP-0013: Update annotation handling
Hi, This BEP proposes a way to better handle annotations in BEL script. First, it updates the syntax
5/7/20
William Hayes
,
Charles Hoyt
2
1/13/20
BEL Conference 2018 Followup/Videos
Hey William, It looks like the link http://bel.bio/conferences/2018/ is down. Is there a way we could
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BEL Conference 2018 Followup/Videos
Hey William, It looks like the link http://bel.bio/conferences/2018/ is down. Is there a way we could
1/13/20
Charles Hoyt
9/24/19
Release of the BEL v2.2 Specification
After the Autumn 2019 meeting of the BEL Language Committee (myself, Natalie, John, and William), we
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Release of the BEL v2.2 Specification
After the Autumn 2019 meeting of the BEL Language Committee (myself, Natalie, John, and William), we
9/24/19
William Hayes
9/2/19
OpenBEL - unsupported/unmaintained
OpenBEL is not being supported. All of the original maintainers have new roles and no one else has
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OpenBEL - unsupported/unmaintained
OpenBEL is not being supported. All of the original maintainers have new roles and no one else has
9/2/19
Charles Hoyt
8/5/19
BEP-0010 - partOf Relationship
This BEP introduces the partOf relationship, similar to that found in the Gene Ontology and other
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BEP-0010 - partOf Relationship
This BEP introduces the partOf relationship, similar to that found in the Gene Ontology and other
8/5/19
Charles Hoyt
8/1/19
BEP-0009 - Definition of Namespaces and Annotations using MIRIAM
This BEP proposes additional syntax (eg, DEFINE NAMESPACE HGNC AS MIRIAM ) for defining a namespace
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BEP-0009 - Definition of Namespaces and Annotations using MIRIAM
This BEP proposes additional syntax (eg, DEFINE NAMESPACE HGNC AS MIRIAM ) for defining a namespace
8/1/19
Charles Hoyt
8/1/19
BEP-0008 - Optional usage of OBO-style identifiers in BEL script
I've written this BEP to suggest an improvement to the <namespace>:<name> used in BEL
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BEP-0008 - Optional usage of OBO-style identifiers in BEL script
I've written this BEP to suggest an improvement to the <namespace>:<name> used in BEL
8/1/19
Dexter Pratt
,
Nimisha Schneider
3
6/5/19
Status / Ownership of the Selventa Knowledgebase?
Great, thanks! On Tuesday, June 4, 2019 at 8:12:18 PM UTC-7, Nimisha Schneider wrote: Hi, I believe
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Status / Ownership of the Selventa Knowledgebase?
Great, thanks! On Tuesday, June 4, 2019 at 8:12:18 PM UTC-7, Nimisha Schneider wrote: Hi, I believe
6/5/19
William Hayes
,
Dexter Pratt
3
1/15/19
Best way to handle physiologic measures?
Semantics are pretty important. This is actually a question that Julia Hoeng asked me that I wasn
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Best way to handle physiologic measures?
Semantics are pretty important. This is actually a question that Julia Hoeng asked me that I wasn
1/15/19
William Hayes
1/15/19
Blog for BEL news
https://medium.com/bel-news Anyone is welcome to write posts for this Medium Publication. The BEL
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Blog for BEL news
https://medium.com/bel-news Anyone is welcome to write posts for this Medium Publication. The BEL
1/15/19
Dexter Pratt
11/9/18
Software developer position at UCSD Cytoscape/NDEx projects
Hi everyone, we are recruiting for a software developer for Cytoscape/NDEx in the Ideker Lab at UCSD
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Software developer position at UCSD Cytoscape/NDEx projects
Hi everyone, we are recruiting for a software developer for Cytoscape/NDEx in the Ideker Lab at UCSD
11/9/18
William Hayes
7/3/18
BEP Review Committee Meeting 7/10
We are holding a BEP Review meeting next week Tuesday July 10th. If you have any unsubmitted comments
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BEP Review Committee Meeting 7/10
We are holding a BEP Review meeting next week Tuesday July 10th. If you have any unsubmitted comments
7/3/18
William Hayes
6/9/18
Q&A
Discussion forum survey
Charlie Hoyt suggested setting up a Discourse (https://www.discourse.org/) forum instead of using
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Q&A
Discussion forum survey
Charlie Hoyt suggested setting up a Discourse (https://www.discourse.org/) forum instead of using
6/9/18
William Hayes
6/9/18
New Draft BEP-0002 - proposing TBD as a placeholder namespace prefix
Hi all, Here is the Pull Request for a new BEL Enhancement Proposal (BEP) https://github.com/belbio/
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New Draft BEP-0002 - proposing TBD as a placeholder namespace prefix
Hi all, Here is the Pull Request for a new BEL Enhancement Proposal (BEP) https://github.com/belbio/
6/9/18
Christian Ebeling
, …
Anselmo Di Fabio
3
5/27/18
Wrong examples in BEL 2.0 specification
As William mentioned, simple things like this are easy to adjust in the documentation directly. It
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Wrong examples in BEL 2.0 specification
As William mentioned, simple things like this are easy to adjust in the documentation directly. It
5/27/18
William Hayes
2
3/15/18
Announcement
BEL Conference May 14 2018, Boston (RSVP Invite)
Web link for conference with current (not final) agenda: http://bel.bio/conference
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Announcement
BEL Conference May 14 2018, Boston (RSVP Invite)
Web link for conference with current (not final) agenda: http://bel.bio/conference
3/15/18
William Hayes
2/17/18
Announcement
BEL Community Meeting - Monday May 14th, Boston
It's happening! More details to follow. We'll be putting a page on our website together with
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Announcement
BEL Community Meeting - Monday May 14th, Boston
It's happening! More details to follow. We'll be putting a page on our website together with
2/17/18
William Hayes
1/31/18
Announcement
BEL.bio announcement
The full details are here: https://medium.com/biodati/bel-bio-announcement-c0a911373757 I'll have
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Announcement
BEL.bio announcement
The full details are here: https://medium.com/biodati/bel-bio-announcement-c0a911373757 I'll have
1/31/18
Christian Ebeling
1/24/18
Few corrections for large_corpus.bel as an example for correct BEL 1.0 syntax
Dear all, I think large_corpus.bel is a great and larger example for the correct BEL 1.0 syntax. Only
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Few corrections for large_corpus.bel as an example for correct BEL 1.0 syntax
Dear all, I think large_corpus.bel is a great and larger example for the correct BEL 1.0 syntax. Only
1/24/18
Christian Ebeling
, …
Natalie Catlett
6
1/23/18
Wrong statement examples in specification BEL 1.0
I found the documentation on the reserved control words in the BEL Script 1.0 section of the OpenBEL
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Wrong statement examples in specification BEL 1.0
I found the documentation on the reserved control words in the BEL Script 1.0 section of the OpenBEL
1/23/18
Christian Ebeling
,
William Hayes
2
1/22/18
Unclear rule in BEL 1.0 Specification: "Line Continuation Operator" inside strings like URLs
Hi Christian, I would absolutely not call this best practice, but I strongly suspect the BEL Script
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Unclear rule in BEL 1.0 Specification: "Line Continuation Operator" inside strings like URLs
Hi Christian, I would absolutely not call this best practice, but I strongly suspect the BEL Script
1/22/18
William Hayes
1/18/18
Announcement
BEL Community Meeting - Boston USA - May 16th'ish
We are hosting a BEL Community Meeting adjacent/overlapping with BioIT World in Boston the week of
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Announcement
BEL Community Meeting - Boston USA - May 16th'ish
We are hosting a BEL Community Meeting adjacent/overlapping with BioIT World in Boston the week of
1/18/18
William Hayes
1/17/18
Re: Digest for openbel-discuss@googlegroups.com - 1 update in 1 topic
Thanks Christian, I'll make the changes unless you'd be willing to make a Pull request on the
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Re: Digest for openbel-discuss@googlegroups.com - 1 update in 1 topic
Thanks Christian, I'll make the changes unless you'd be willing to make a Pull request on the
1/17/18
William Hayes
1/9/18
BEL Community Meeting - planning
Hi all, We'd like to kick BEL back into gear and are thinking about helping organize a BEL
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BEL Community Meeting - planning
Hi all, We'd like to kick BEL back into gear and are thinking about helping organize a BEL
1/9/18
saqi...@gmail.com
,
Natalie Catlett
3
6/14/17
Q&A
BEL Navigator 1.1.0
Hi - thanks for the link; Re. the other points, I have compiled a KAM with the BEL framework, and I
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Q&A
BEL Navigator 1.1.0
Hi - thanks for the link; Re. the other points, I have compiled a KAM with the BEL framework, and I
6/14/17
saqi...@gmail.com
, …
William Hayes
6
6/10/17
Q&A
BEL Navigator Cytoscape 3 App Tutorial
Hi Natalie, Tony and Kelly, Any of you have a copy of this tutorial? I couldn't find a copy and
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Q&A
BEL Navigator Cytoscape 3 App Tutorial
Hi Natalie, Tony and Kelly, Any of you have a copy of this tutorial? I couldn't find a copy and
6/10/17
William Hayes
,
Charles Hoyt
3
4/1/17
BEL1 to BEL2 migration script?
Thanks Charles! On Saturday, April 1, 2017 at 5:28:48 AM UTC-4, Charles Hoyt wrote: PyBEL can do that
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BEL1 to BEL2 migration script?
Thanks Charles! On Saturday, April 1, 2017 at 5:28:48 AM UTC-4, Charles Hoyt wrote: PyBEL can do that
4/1/17
William Hayes
, …
Anselmo Di Fabio
9
3/1/17
Naming discussion: Pathway vs Network
Okay, after sleeping on it a bit I feel this may be a good take: Since there is reservation on using
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Naming discussion: Pathway vs Network
Okay, after sleeping on it a bit I feel this may be a good take: Since there is reservation on using
3/1/17
Reagon Karki
,
Natalie Catlett
2
1/30/17
Q&A
How to use BV-2 microglial cells as annotation?
Hi Reagon, I suggest either: (1) use the term "BV-2" knowing that you will get warnings
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Q&A
How to use BV-2 microglial cells as annotation?
Hi Reagon, I suggest either: (1) use the term "BV-2" knowing that you will get warnings
1/30/17