Solr Version
Jamie Munro
Jamie Munro
Frederick Giasson
I'm just working through the manual installation instructions for StructWSF - I had problems with the automated installer failing and am not familiar enough with Linux to go digging around for errors and I figured I'd probably learn something by going through the manaul instructions which are very comprehensive and useful. Thanks!
I've got to the installing Solr step and the instructions refer to version 1.4.0 which doesn't seem to available on any mirrors. Does it matter which version I install or does it have to be 1.4.0? And if so could you provide a link?
In the coming month or so, we should release a new version of structWSF which will includes all the modifications. This new version will be a big one with a new Solr index that includes new features (such as supporting different datatypes, using the Solr 3.6's core geo features and multiple languages handling).
But for now, knowing what chocked with the installer may be helpful to improve it.
[1] https://github.com/structureddynamics/structWSF-Open-Semantic-Framework/tree/dev
Thanks!
Take care,
Fred
Jamie Munro
On Saturday, 11 August 2012 10:39:18 UTC+1, Jamie Munro wrote:
Frederick Giasson
Thanks for the reply. I was using the automatic installer on Ubuntu 10.04 running on a local VMware player. I didn't manage to make a note of any error messages as it was running. I know that I couldn't get virtuoso, drupal or phpmyadmin to load once it had completed. I didn't try the solr admin page. I realised that the phpmyadmin install failed because I hadn't correctly selected Apache2 as the webserver (I pressed Enter without pressing space on the selection menu) and I may have fallen foul of this later on in the process. I also suspect that drupal wasn't accessible for two reasons - firstly I mistyped the mysql root password and the script noted the permission denied error and then moved on,
and secondly, possibly because I didn't have a domain other than localhost on the VMware player configured.
There was also a mention somewhere - sorry I can't remember where - of a log file in a 'tests' directory which didn't exist when I went looking for more detail about what may have gone wrong.
I've abandoned the VMware on my local PC and I've since set up two micro instances on AWS and I am running the installer again on one (still waiting for it to finish) while I work through the manual process on the other one. So far I've managed to work my way around the different versions mentioned in the manual install file. Mostly this has just been a case of getting the updated links for wget and figuring out that the apache user and group are www-data:www-data in step 8.
I've gone with structWSF-v1.0a94.zip as it matched the folder structure in the manual instructions. The folder structure in a95.zip seems to be completely different with additional nested levels and I couldn't find WebServices.php
At the moment I am a bit confused with the order of when to create the ontology folder structure and if I just create this from the root or within the structwsf folder. Should I create these folders, download the .srz and .owl files before initiating the web services framework?
(1) create folders
(2) get ontologies into these folders
(3) upload the SRZ files
(4) change rights
Hopefully the automated installer will work as expected this time but in any event I'm certainly learning a lot by going through the manual process!
We should have a new version of structWSF within 1 or 2 months (the one currently into the DEV branch of the structWSF repository). This will lead to a major release, but there won't be an upgrader script (since the supported ubuntu server will change, the solr version will change, the solr schema will change (so data will need to be re-indexed) and that the Drupal version will change as well).
[1] https://github.com/structureddynamics/Open-Semantic-Framework-Installer/issues/1
Thanks,
Fred
Frederick Giasson
Do use the installer version 1.0a94 for now. I think I will have to
re-create the one for the version 1.0a95 that doesn't use the same
codebase. I am thinking about that in prevision of the next major
version of OSF. I may have gone one step too far with the release of 1.0a95.
Thanks,
Fred
Jamie Munro
Frederick Giasson
>
> The automatic installation script "osf-installer-v1.0a5.zip" will
> install StructWSF version 1.0a95 correctly but if I want to complete
> my manual installation I should use StructWSF version 1.0a94?
Thanks,
Fred
Jamie Munro
- Content Permissions
- User Reference
- OG Access Control
- ViewsUI
Frederick Giasson
An update on my experiences so far with a few queries for good measure...
The automated installer osf-installer-v1.0a5.zip completed without incident or reporting any errors and most things seem to work but I am still having a few problems. I created an ami image of the instance immediately afterwards so if you would like me to go back to check anything or provide more information that won't be a problem.
I can login to the Drupal installation on www.mydomain.com
I can login to the Virtuoso installation on www.mydomain.com:8890/conductorI can see the Solr admin page on www.mydomain.com:8983/solr/admin
I had to enable the following drupal modules manually:
CCK
- Content Permissions
- User Reference
Organic Groups
- OG Access Control
Views
- ViewsUI
The settings in the OG User Roles were blank so I selected admin, contributor and owner/curator and set the default roles for admin users to admin and new group users to contributors.
I also had to enable all the permissions to all modules for the admin user manually. When I tried to copy this command from the install script (sudo drush perm-grant 'admin' all) it failed with
You must specify roles to grant permissions to, using the --roles [error]option.Drush command terminated abnormally due to an unrecoverable error. [error]
https://github.com/fgiasson/Open-Semantic-Framework-Installer/commit/1233a9266aff5b178b0d54958a46be5c0be61785
Both classHierarchySerialized.srz and classPropertyHierarchy.srz were empty and I needed to download them again from http://techwiki.openstructs.org/files
Maybe something else re-wrote them in your process
When I ran the test SPARQL query I was initially just getting the table headings s | p | o and a blank page but after renaming the wsf_indexer.php and playing with the domain names and ip addresses I managed to get this give me a listing of ontologies. I renamed it once I was finished.
These are the commands I used:
http://www.mydomain.com/ws/auth/wsf_indexer.php?action=create_user_full_access&user_address=127.0.0.1&server_address=http://localhost
http://www.mydomain.com/ws/auth/wsf_indexer.php?action=create_user_full_access&user_address=[EC2_INTERNAL_IP]&server_address=http://localhost
http://www.mydomain.com/ws/auth/wsf_indexer.php?action=create_world_readable_dataset_read&server_address=http://localhost
curl -H "Accept: text/xml" "http://localhost/ws/dataset/create/" -d "uri=http://localhost/test/&title=Test&description=test&creator=http://localhost/drupal/user/1/"
Should I be using my external, (in this case elastic) IP address instead of the EC2 Internal IP address?
Once I had done this importing structwsf_test.xml from the conStruct import page worked (with several warnings about missing attributes) and I can browse the test dataset.
I am having a problem viewing any ontologies in Drupal and the www.mydomain.com/conStruct/ontology/ page simply shows a box with "error ::". I tried changing the ontologies location in settings to /data/ontologies/files/ but no luck.The menu is visible on the right but clicking 'reload' gives me a series of errors:Web service error: (status: 400) Bad Request - WS-ONTOLOGY-CREATE-302 /ws/ontology/create/ Ontology already existing Can't create the ontology because an ontology with that URI is already existing in the system. Error
Is there a setting or permission setting that I have missed in order to view and edit ontologies?
(1) reload tomcat6
(2) go to structOntology and press "reload all"
It should appear. Reload All will read all the ontologies files in /data/ontologies/files/ and reload them into the tomcat6 (owlapi) instance. Then you should see them into structOntology.
Thanks again and sorry if some of this is basic stuff I just don't understand yet!
Thanks,
Fred
Jamie Munro
Hi again Fred
Thanks for the reply and I'm encouraged that I seem to be on the right path! You’re right that it is quite daunting for someone just starting out but I am slowly starting to see how things fit together and the articles on the Techwiki site are helpful so I am slowly wading through them. I also appreciate your support!
I downloaded the .srz files and the new.owl file from the location you suggested then did sudo /etc/init.d/tomcat6 restart before trying to reload the ontologies from the Drupal page. The ontologies say they have loaded but then I get the java errors below and no ontologies appear in the list.
· rdfs.xml reloaded
· aggr.owl reloaded
· wsf.owl reloaded
· wgs84.owl reloaded
· iron.owl reloaded
· rdf.xml reloaded
· owl.rdf reloaded
· sco.owl reloaded
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6.0_24@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6.0_24@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
Not sure if it is relevant but I’ve had a look at the Apache2 error.log and can see several errors related to undefined indexes (HTTP_ACCEPT_CHARSET) in /structwsf/ws/ontology/create/OntologyCreate.php (lines 488 and 487) and undefined variables (ontology) in /usr/share/structwsf/StructuredDynamics/structwsf/ws/ontology/create/index.php (lines 188 and 189)
On Saturday, 11 August 2012 10:39:18 UTC+1, Jamie Munro wrote:
I'm just working through the manual installation instructions for StructWSF - I had problems with the automated installer failing and am not familiar enough with Linux to go digging around for errors and I figured I'd probably learn something by going through the manaul instructions which are very comprehensive and useful. Thanks!I've got to the installing Solr step and the instructions refer to version 1.4.0 which doesn't seem to available on any mirrors. Does it matter which version I install or does it have to be 1.4.0? And if so could you provide a link?ThanksJamie
Frederick Giasson
Thanks for the reply and I'm encouraged that I seem to be on the right path! You’re right that it is quite daunting for someone just starting out but I am slowly starting to see how things fit together and the articles on the Techwiki site are helpful so I am slowly wading through them. I also appreciate your support!
I downloaded the .srz files and the new.owl file from the location you suggested then did sudo /etc/init.d/tomcat6 restart before trying to reload the ontologies from the Drupal page. The ontologies say they have loaded but then I get the java errors below and no ontologies appear in the list.
· rdfs.xml reloaded
· aggr.owl reloaded
· wsf.owl reloaded
· wgs84.owl reloaded
· iron.owl reloaded
· rdf.xml reloaded
· owl.rdf reloaded
· sco.owl reloaded
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6.0_24@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6.0_24@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
Not sure if it is relevant but I’ve had a look at the Apache2 error.log and can see several errors related to undefined indexes (HTTP_ACCEPT_CHARSET) in /structwsf/ws/ontology/create/OntologyCreate.php (lines 488 and 487) and undefined variables (ontology) in /usr/share/structwsf/StructuredDynamics/structwsf/ws/ontology/create/index.php (lines 188 and 189)
However, there is no real impacts with this issue, as long as everything got loaded.
For the undefined indexes: there is no impact with them. There are just notices returned by PHP. However, I will have to clean them out eventually. For now, you can disable the notices reported in the log file by properly configuring your php.ini file to just return errors and warnings.
Thanks,
Fred
Jamie Munro
On Monday, 20 August 2012 14:33:58 UTC+1, Frederick Giasson wrote:
Hi
Thanks for the reply and I'm encouraged that I seem to be on the right path! You’re right that it is quite daunting for someone just starting out but I am slowly starting to see how things fit together and the articles on the Techwiki site are helpful so I am slowly wading through them. I also appreciate your support!
Good!
I downloaded the .srz files and the new.owl file from the location you suggested then did sudo /etc/init.d/tomcat6 restart before trying to reload the ontologies from the Drupal page. The ontologies say they have loaded but then I get the java errors below and no ontologies appear in the list.
· rdfs.xml reloaded
· aggr.owl reloaded
· wsf.owl reloaded
· wgs84.owl reloaded
· iron.owl reloaded
· rdf.xml reloaded
· owl.rdf reloaded
· sco.owl reloaded
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6....@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
· Web service error: (status: 500) Internal Server Error - HTTP-500 /ws/ontology/create/ Error Uncaught [[o:Exception]:"java.lang.Exception: Invoke failed: [[o:Request$PhpNull]]->toString. Cause: java.lang.NullPointerException: cannot call "toString()" on a Java null object. A previous Java call has returned a null value, use java_is_null($jvalue) to check. VM: 1.6....@http://java.sun.com/" at:#-5 php.java.bridge.JavaBridge.Invoke(JavaBridge.java:999)#-4 php.java.bridge.Request.handleRequest(Request.java:417)#-3 php.java.bridge.Request.handleRequests(Request.java:500)#-2 php.java.bridge.http.ContextRunner.run(ContextRunner.java:145)#-1 php.java.bridge.ThreadPool$Delegate.run(ThreadPool.java:60)#0 http://localhost:8080/OWLAPI/java/Java.inc(232): java_ThrowExceptionProxyFactory->getProxy(20, 'php.java.bridge...', 'T', true)#1 http://localhost:8080/OWLAPI/java/Java.inc(360): java_Arg->getResult(true)#2 http://localhost:8080/OWLAPI/java/Java.inc(366): java_Client->getWrappedResult(true)#3 http://localhost:8080/OWLAPI/java/Java.inc(560): java_Client->getResult()#4 http://localhost:8080/OWLAPI/jav [file]: http://localhost:8080/OWLAPI/java/Java.inc[line]:195 Fatal
Not sure if it is relevant but I’ve had a look at the Apache2 error.log and can see several errors related to undefined indexes (HTTP_ACCEPT_CHARSET) in /structwsf/ws/ontology/create/OntologyCreate.php (lines 488 and 487) and undefined variables (ontology) in /usr/share/structwsf/StructuredDynamics/structwsf/ws/ontology/create/index.php (lines 188 and 189)
Frederick Giasson
>
> I think I may still be missing something because even though pressing
> 'reload' reported that the ontologies had been loaded, when I click on
> the Ontology link I just get 'error::' under active ontology.
> Screenshot attached.
>
current error usually appear when we can't reach the OWLAPI instance.
So, first thing to check is: is tomcat6 currently running with the
OWLAPI webapp?
Thanks,
Fred
Jamie Munro
Frederick Giasson
I can see the OWLAPI folder in /var/lib/tomcat6/webapps/OWLAPI (which is not empty).After opening up port 8080 I can browse to http://www.mydomain.com:8080/OWLAPI/java/Java.inc which simply shows the text of Java.inc
I had a look at the tomcat6 policy file and added the line from the manual install file then restarted tomcat6grant codeBase "file:/var/lib/tomcat6/webapps/OWLAPI/WEB-INF/-" { permission java.security.AllPermission; };
Still no luck and the ontologies page is still showing an error.
I also saw the two notes about PHP/Java bridge in the manual install file and have been trying to go through the FAQs file to debug it but must confess to getting lost...
Thanks,
Fred
Jamie Munro
Frederick Giasson
>
> 82ms
> POST /ws/ontology/read/
> Aborted
> localhost
> 0
"response" tab and copy/paste its content here. This should gives us the
error and so the reason why it aborted there.
Thanks,
Fred
Jamie Munro
Unfortunately there is nothing to expand. I noticed that that entry in Firebug is the only one that has localhost listed under domain so I tried running the wsf_indexer commands again with all my possible IP addresses for the user address but still no luck.
Thanks
Jamie
Frederick Giasson
> Unfortunately there is nothing to expand. I noticed that that entry in
> Firebug is the only one that has localhost listed under domain so I
> tried running the wsf_indexer commands again with all my possible IP
> addresses for the user address but still no luck.
network to reach is located on the localhost. But if your browser
doesn't share the same local host, it won't get it.
This means that you have to properly configure it as well:
(1) Make sure you see your "www.mydomain.com/ws" structWSF instance
registered in structNetwork (http://www.mydomain.com/construct/networks/)
(2) Make sure to select your registered network in the Ontology
Settings: http://www.mydomain.com/admin/settings/conStruct/structOntology/
Then refresh that page.
Thanks,
Fred
Jamie Munro
That's given me a new variation! It's now coming up with "parsererror::" and then the whole page loads within the ontology box as though it was an iframe. Screenshot attached.
The Response tab for the line that aborted previously in firebug is below.
Thanks!
Jamie
POST http://www.saears.eu/conStruct/ontology/www.saears.eu/ws/ontology/read/
200 OK203ms
HeadersPostResponseHTMLCookies
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Strict//EN"
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd">
<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en" dir="ltr">
<head>
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<link type="text/css" rel="stylesheet" media="all" href="http://www.saears.eu/sites/all/modules/conStruct/modules/structOntology/css/style.css" />
<link type="text/css" rel="stylesheet" media="all" href="http://www.saears.eu/sites/all/modules/conStruct/modules/structOntology/css/jquery.contextMenu.css" />
<link rel="shortcut icon" href="/misc/favicon.ico" type="image/x-icon" />
<title>SAEARS Ontology | A SAEARS Ontology</title>
<link type="text/css" rel="stylesheet" media="all" href="/modules/node/node.css?G" />
<link type="text/css" rel="stylesheet" media="all" href="/modules/system/defaults.css?G" />
<link type="text/css" rel="stylesheet" media="all" href="/modules/system/system.css?G" />
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<script type="text/javascript" src="/sites/all/modules/og/og.js?G"></script>
<script type="text/javascript" src="/sites/all/modules/conStruct/modules/structOntology/js/jquery.min.js?G"></script>
<script type="text/javascript" src="/sites/all/modules/conStruct/modules/structOntology/js/ontology.js?G"></script>
<script type="text/javascript" src="/sites/all/modules/conStruct/modules/structOntology/js/resultset.js?G"></script>
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Frederick Giasson
The endpoint is still not right. The browser tries to access:
> POST
> http://www.saears.eu/conStruct/ontology/www.saears.eu/ws/ontology/read/
But it should:
http://www.saears.eu/ws/ontology/read/
What it gets is a html page from that URL instead of reaching the
Ontology Read endpoint.
Do you have an idea of what could be the problem (some of your configs?)
Thanks,
Fred
Jamie Munro
You're a genius! I'd typed the domain in as www.domain.com instead of http://www.domain.com and it's working now.
Thanks for all your time and patient support!
Jamie
Frederick Giasson
> You're a genius! I'd typed the domain in as www.domain.com instead of
> http://www.domain.com and it's working now.
> Thanks for all your time and patient support!
Thanks,
Fred
Jamie Munro
Shan Wan
Downloading the core OSF ontologies...
Installing the core OSF ontologies...
Loading the core OSF ontologies...
Loading: file://localhost/data//ontologies/files/aggr.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/aggr.owl. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-RE GISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid.</description> <debugInformation></debugInformation> <level>Warning </level> </error>
Debug file: /tmp/4394ece664d19dd912aa9e1f4f76f08a.error
Can't load ontology file file://localhost/data//ontologies/files/aggr.owl. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr /share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</ debugInformation> <level>Fatal</level> </error>
Debug file: /tmp/d441b65a1f6e698e2cbc4c23fce6deb3.error
Loading: file://localhost/data//ontologies/files/iron.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/iron.owl. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid .</description> <debugInformation></debugInformation> <level>Warning </level> </error>
Debug file: /tmp/0c3d59cbcab6d942f466819c70546fef.error
Can't load ontology file file://localhost/data//ontologies/files/iron.owl. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr /share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</ debugInformation> <level>Fatal</level> </error>
Debug file: /tmp/0ae480bc7e6208cf34242ee35dc656c1.error
Loading: file://localhost/data//ontologies/files/owl.rdf
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/owl.rdf. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid. </description> <debugInformation></debugInformation> <level>Warning< /level> </error>
Debug file: /tmp/f3c85a00a3ab3a657d16f8e95bd032ae.error
Can't load ontology file file://localhost/data//ontologies/files/owl.rdf. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/ share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</d ebugInformation> <level>Fatal</level> </error>
Debug file: /tmp/309f20f5e8b3b19d30a563894ced4e8d.error
Loading: file://localhost/data//ontologies/files/rdfs.xml
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/rdfs.xml. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid .</description> <debugInformation></debugInformation> <level>Warning </level> </error>
Debug file: /tmp/79fc17a29537894dfc598118baa31a07.error
Can't load ontology file file://localhost/data//ontologies/files/rdfs.xml. Internal Server Error<?xmlversion="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr /share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</ debugInformation> <level>Fatal</level> </error>
Debug file: /tmp/a8cc0c527f41e20485e7b5c0f834cd0c.error
Loading: file://localhost/data//ontologies/files/rdf.xml
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/rdf.xml. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid. </description> <debugInformation></debugInformation> <level>Warning< /level> </error>
Debug file: /tmp/a05aa3b90170974c5584c77dbf8eec42.error
Can't load ontology file file://localhost/data//ontologies/files/rdf.xml. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/ share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</d ebugInformation> <level>Fatal</level> </error>
Debug file: /tmp/5a3312f2d7e260ef38097c7bebcfd54a.error
Loading: file://localhost/data//ontologies/files/sco.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/sco.owl. BadRequest<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid. </description> <debugInformation></debugInformation> <level>Warning< /level> </error>
Debug file: /tmp/a78885a2ae79120219e3f417df07001d.error
Can't load ontology file file://localhost/data//ontologies/files/sco.owl. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</d ebugInformation> <level>Fatal</level> </error>
Debug file: /tmp/e04fbc61ea94e4095f6c1abff4f5ad9c.error
Loading: file://localhost/data//ontologies/files/wgs84.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/wgs84.owl. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid.</description> <debugInformation></debugInformation> <level>Warning</level> </error>
Debug file: /tmp/4d5aadc016e411c349389d2ffaf71136.error
Can't load ontology file file://localhost/data//ontologies/files/wgs84.owl. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /us r/share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189< /debugInformation> <level>Fatal</level> </error>
Debug file: /tmp/754cd21ff563b4006d7cac7288c4feef.error
Loading: file://localhost/data//ontologies/files/wsf.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/wsf.owl. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid.</description> <debugInformation></debugInformation> <level>Warning< /level> </error>
Debug file: /tmp/58cd9e51abc9683c39eb4e8ad065983b.error
Can't load ontology file file://localhost/data//ontologies/files/wsf.owl. Internal Server Error<?xml v ersion="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java .inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189</d ebugInformation> <level>Fatal</level> </error>
Debug file: /tmp/b6409e8b0156dcb6a5de0c276fb2dffa.error
Loading: file://localhost/data//ontologies/files/drupal.owl
Can't create permissions for the loaded ontology: file://localhost/data//ontologies/files/drupal.owl. Bad Request<?xml version="1.0" encoding="utf-8"?> <error> <id>WS-AUTH-REGISTRAR-ACCESS-309</id> <webservice>/ws/auth/registrar/access/</webservice> <name>Invalid group URI</name> <description>The URI of the group is not valid.</description> <debugInformation></debugInformation> <level>Warni ng</level> </error>
Debug file: /tmp/a60b783771f815cd6b407b1941465c51.error
Can't load ontology file file://localhost/data//ontologies/files/drupal.owl. Internal Server Error<?xm l version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/create/</webservice> <name>Compile Error</name> <description>require_once(): Failed opening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/share/osf/StructuredDynamics/osf/ws/ontology/create/interfaces/DefaultSourceInterface.php[line]:189 </debugInformation> <level>Fatal</level> </error>
Debug file: /tmp/d90cc2c6cb56f148599123ddfc2181b8.error
Creating underlying ontological structures...
Generating derivate ontological structures...
Can't get loaded ontologies. Internal Server Error<?xml version="1.0" encoding="utf-8"?> <error> <id>HTTP-500</id> <webservice>/ws/ontology/read/</webservice> <name>Compile Error</name> <description>require_once(): Failed o pening required 'http://localhost:8080/OWLAPI/java/Java.inc' (include_path='.:/usr/share/php')</description> <debugInformation>[file]: /usr/share/osf/StructuredDynamics/osf/ws/ontology/read/interfaces/DefaultSourceInterface.php[line]:359</debugInformation> <level>Fatal</l evel> </error>
Debug file: /tmp/f4fea2cbc72c89f59aa01b87d6fba4a9.error
在 2012年8月21日星期二 UTC+8上午4:48:09，Frederick Giasson写道：
Shan Wan
在 2012年8月21日星期二 UTC+8下午10:01:43，Frederick Giasson写道：
