Hi Ben. It would be better if you would include both the guide and debug logs so we can do a more thorough job. Please use the built-in PHD2 Upload Log Files feature, explained here:
https://openphdguiding.org/getting-help/
To answer your other question, there’s no periodic error to worry about in Dec because the Dec motor and axis are mostly idle during guiding and tracking. There are only intermittent very small moves in response to guide commands. RA, of course, is a different matter because the RA drive system is running continuously in order for the scope to track the sidereal movement of the sky.
Bruce
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Also, could you please provide some details on the gear you have riding on the mount? Are you really guiding with something that has only a 100mm focal length? The guider image scale is really coarse if that’s correct.
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On the second page of the Upload UI, it will tell you what logs are being uploaded. It will always include the debug log file unless you’ve moved it or deleted it. Your upload included only the guide log.
It may be possible in some circumstances to get acceptable guiding with these coarse image scales, and maybe 1 arc-sec RMS is good enough for you. It assumes, of course, that you are working with stellar SNR values that will routinely allow centroid accuracy of 0.1 px or better. What you may not be thinking about is the mechanical requirements it places on the guiding assembly. In your case, a 3.8 micron shift of the guide camera is going to create a 7.7 arc-sec guiding excursion. That’s 1/10 the thickness of a human hair. Is that little finder-scope mounting arrangement and associated guide cables going to meet that requirement? Here's a look at a typical guide session in your log (green is Dec):

There's very little difference here between RA and Dec even though the Dec motor is idle about 90% of the time. You can see there are a lot of big excursions of 3-4 arc-sec on both axes, including the mostly-idle Dec axis. I have never heard that this mount has problems with mechanical cross-talk between the axes so that would be a question you should direct to iOptron. All of this unwanted movement could be due to seeing if it's really poor; or to wind, vibration, etc. But it could also be caused by a lack of rigidity in the guiding assembly, remembering that a 4 arc-sec move here will be caused by a 2 micron movement of the guide camera. If you want to isolate possible sources of this movement, you can run some test sessions guiding through the main scope. You can always try using PPEC for RA but I really doubt that it will help much. One of the common problems with these strain-wave mounts is that their tracking errors aren't truly periodic so PEC models often don't work very well. I think that's one reason manufacturers of these kinds of mounts offer some kind of absolute encoder option in RA.
Regards,
Bruce
Run the Guiding Assistant, let it measure the Dec backlash. There shouldn’t be any to speak of.
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1. DEC large backlash: fixed by adjusting end cap
2. DEC axle adjusted
3. RA stopper checked: ok
4. Firmware upgraded
5. Wifi: ok,
6. iPolar: ok
7. Guiding emulation: ok