Hi MS
Guiding encoder mounts is very different than guiding non-encoder mounts. I think you will end up with better results with those recommendations
Otherwise, looking at your logs and picking the longest run you have, it doesn't seem like your RMS is that high?
here the 34 minute run, overall RMS is 0.64 with ra and dec nearly equal - that suggests you are guiding at the limit of seeing
In fact you can see towards the second half the seeing degraded, so looking at the first half of that run, your overall rms was 0.35" on each axis, nearly equal, and overall 0.5" RMS
Picking a third run, the 11 minute run, even though you were fiddling with the settings and polar alignment seems off (dec pulses in only one direction) your overall RMS is 0.41"
just looking at a couple others, i see total RMS of 0.52", 0.37" etc.