You should collect and analyze unguided data to measure PE. Once you build a correction curve for the mount and upload it, the native PE should be reduced. Then PHD2 will typically guide out the remaining error. To collect raw tracking data, disable guide output in PHD2:

Good luck,
Bruce
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Hi Ken. Seems like there should usually be no need to do the initial calibration unless you’ve rotated the guide camera. Fire up PHD2, probably using auto-restore calibration, turn off guide commands, loop, then “guide.” I rarely re-do calibrations, so maybe I’m missing something.
Cheers,
Bruce
From: open-phd...@googlegroups.com [mailto:open-phd...@googlegroups.com] On Behalf Of Ken Self
Sent: Saturday, May 07, 2016 2:56
PM
To: Open PHD Guiding
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This looks like the same problem as before, you have commas as decimal separators. Log analysis apps aren’t going to handle that, include PecPrep. You need to wait until the next Linux release package is available from Patrick or manually edit all the floating point numbers in the guide log.
Bruce