I'm not saying anything is wrong with using your two refractors on the mount, I'm only saying I haven't seen that configuration before. Usually we're looking at heavy but compact telescopes such as the CDK design. As you probably know, these mounts are quite sensitive to balance, need to be "tuned", and are also sensitive to wind. So I don't know how that will affect a setup like yours where there are two scopes with distributed weight loads. In any case, I don't really follow your preoccupation with the Dec performance. At least in the log for your 8/28 session, both axes performed equally poorly. Here are two examples, both with RA in red and Dec in green:


This sort of thing is not at all what we expect from a high-end mount with absolute encoders. It has nothing to do with polar alignment error, there is something mechanically wrong with the setup. If you think the PA has suddenly changed, that may be because something on your rig has loosened up which could also affect your tracking performance. The top graph shows a long period of very poor tracking which suddenly stabilizes on its own. This is a common symptom when the underlying problem is cable routing or something else that is interfering with the smooth tracking of the guide camera. In these graphs, the sudden "return to zero" is a consequence of losing the guide star, something that is happening much too frequently for you. Of course, when you get huge guide star excursions like the 20-30 arc-sec we see here, the original primary guide star will probably be lost and you will be trying to guide on whatever happens to be inside the tracking region. I noticed that you had disabled the alert messages for situations when PHD2 can't correct adequately for RA. That may have led you to believe that Dec was your only problem - not the case. Disabling alerts like this doesn't usually make much sense, the problems are real and the result with be poor until they are corrected.
With regard to the edited debug log file, my guess is that you originally edited the file in order to attach it to your forum message, at which point the original data are lost. It doesn't matter, but please don't modify the log files in any way if you need to submit them to get help.
Hope you can track down these problems quickly,
Bruce