Hi Martin,
For the ontologies, you can create a third ontology file that imports the two ontologies, and then provide a XML catalog file telling how to get these files.
For a concrete example, see https://github.com/ontopic-vkg/destination-tutorial/blob/master/vkg/dest-solution.ttl and https://github.com/ontopic-vkg/destination-tutorial/blob/master/vkg/catalog-v001.xml .
For what regards the mapping files, at the moment there is no
alternative to merging them. This can be done easily by converting
them first into R2RML (if they are not already) and then merge
them using the riot from Jena. In a project, we used the following
Docker image for Jena: https://github.com/stain/jena-docker
Then the command was something like :
docker jena riot --formatted=TURTLE ./mapping1.ttl ./mapping2.ttl > ./merged-mapping.ttl
Best,
Benjamin
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