DOID (Cancer Subtree) <-> OncoTree

[Michael Piechotta]

Dear reader,

I would like to know how to map between DOID (Cancer Subtree) <-> OncoTree.

It seems, there is an indirect way by using crossreferences to NCI:

DOID (Cancer Subtree) <-NCI-> OncoTree.

Questions:

* Is there a direct (or better) way?

* From your experience, do you know the overlap/alignment of DOID (Cancer Subtree) and OncoTree?

Best,

Michael

[Ritika Kundra]

Hi Michael,

We currently don't support DOID mapping. So as you suggested, you will have to map oncotree to NCIt and then proceed accordingly. We have a mapping tool that should be able to easily map oncotree to NCIt (http://oncotree.mskcc.org/#ontology-to-ontology-mapping-tool). One thing to note is that we are still enhancing the NCI mapping so you might find some non-mapped codes. You can send those over to us and we can prioritize releasing them.

Thanks,

Ritika

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[Michael Piechotta]

Hi Ritika,

thank you for your quick and helpful response.

Best,

Michael

[Miguel Grau]

Hi Michael, 

Did you solve this? Facing the same problem now. 

The NCIt <-> Oncotree connection looks pretty straighfoward with http://oncotree.mskcc.org/#ontology-to-ontology-mapping-tool but not sure about the DOID (Cancer Subtree) <-> NCIt Step

Thanks, 

Miquel