Groups

OncoTree Users

Contact owners and managers

1–30 of 53

Welcome to the Oncotree Users google group. This is a forum to ask questions and discuss the Oncotree website and web services (available at oncotree.mskcc.org).

0 selected

Jeremy Warner, Ritika Kundra3

Aug 26

OncoTree and tissue/cell of origin

Hi Ritika, It looks like that could work, using the NCIT's "Disease_Has_Normal_Cell_Origin

unread,

OncoTree and tissue/cell of origin

Hi Ritika, It looks like that could work, using the NCIT's "Disease_Has_Normal_Cell_Origin

Aug 26

William Shao, ritika...@gmail.com3

May 5

NCI-H854 annotation

Ah I see, thanks so much Ritika! William On Monday, May 5, 2025 at 5:29:58 PM UTC-4 ritika...@gmail.

unread,

NCI-H854 annotation

Ah I see, thanks so much Ritika! William On Monday, May 5, 2025 at 5:29:58 PM UTC-4 ritika...@gmail.

May 5

Samantha Stokes, … ritika...@gmail.com4

May 5

Updates to Oncotree?

Thank you for the feedback. We are currently looking at the WHO CNS to update the tree. This is what

unread,

Updates to Oncotree?

Thank you for the feedback. We are currently looking at the WHO CNS to update the tree. This is what

May 5

Sara Horie, ritika...@gmail.com5

Mar 14

Use of screenshots of OncoTree

Hi Ritika, Thank you for your confirmation. Best regards, Sara On Wednesday, March 12, 2025 at 11:10:

unread,

Use of screenshots of OncoTree

Hi Ritika, Thank you for your confirmation. Best regards, Sara On Wednesday, March 12, 2025 at 11:10:

Mar 14

Anurag Saxena, … Ritika Kundra4

Jan 31

ICDO Topography + Morphology pairing to Oncotree translation

Hi Anurag and Vincent, We are aware that this mapping is outdated. Currently, the mapping update is

unread,

ICDO Topography + Morphology pairing to Oncotree translation

Hi Anurag and Vincent, We are aware that this mapping is outdated. Currently, the mapping update is

Jan 31

Dylan, ritika...@gmail.com2

Jan 22

Missing UMLS references

Hi Dylan, Apologies for missing your last email. This is a great addition! We will review and add it

unread,

Missing UMLS references

Hi Dylan, Apologies for missing your last email. This is a great addition! We will review and add it

Jan 22

Alexander Paynter, … ritika...@gmail.com4

12/31/24

New display feedback

Hi Cristina, Thank you for the feedback. We have enabled that back. Ritika On Friday, November 29,

unread,

New display feedback

Hi Cristina, Thank you for the feedback. We have enabled that back. Ritika On Friday, November 29,

12/31/24

11/22/24

NCIt to OncoTree Mapping

Hello, I am trying to annotate COSMIC Phenotype IDs (which are already annotated with NCIt code) with

unread,

NCIt to OncoTree Mapping

Hello, I am trying to annotate COSMIC Phenotype IDs (which are already annotated with NCIt code) with

11/22/24

Sidney Smith, ritika...@gmail.com5

11/20/24

ICD-O-3 to OncoTree Mapping

Hi Ritika, We will need all cancer types, but I think Breast and Colorectal will be good to

unread,

ICD-O-3 to OncoTree Mapping

Hi Ritika, We will need all cancer types, but I think Breast and Colorectal will be good to

11/20/24

Robert Allaway, … Robert Allaway8

11/20/24

Addition of nerve sheath tumor subtypes?

Hi Ritika, Thanks for the feedback. Just to check, what about cutaneous neurofibroma? Thank you,

unread,

Addition of nerve sheath tumor subtypes?

Hi Ritika, Thanks for the feedback. Just to check, what about cutaneous neurofibroma? Thank you,

11/20/24

8/9/24

Re: Moderator's spam report for oncotree-users@googlegroups.com

Thank you for your message. I am out of the office until August 19 with limited access to email. I

unread,

Re: Moderator's spam report for oncotree-users@googlegroups.com

Thank you for your message. I am out of the office until August 19 with limited access to email. I

8/9/24

8/5/24

For metastasis tumor and TNBC

Hi team, Thank you for creating and maintaining such a systematic categorization system for cancer!

unread,

For metastasis tumor and TNBC

Hi team, Thank you for creating and maintaining such a systematic categorization system for cancer!

8/5/24

Benjamin Gyori, ritika...@gmail.com2

8/2/24

Add more mappings to NCIT/UMLS and other disease ontologies

Hi Ben, Thank you for reaching out and apologies for the delay. We do want to finish all the gaps for

unread,

Add more mappings to NCIT/UMLS and other disease ontologies

Hi Ben, Thank you for reaching out and apologies for the delay. We do want to finish all the gaps for

8/2/24

Jiawen Li (Taylor‘s Wonderland), ritika...@gmail.com2

8/2/24

Website Unavailable

Can you check now? There was a server issue which has since been resolved. On Thursday, July 25, 2024

unread,

Website Unavailable

Can you check now? There was a server issue which has since been resolved. On Thursday, July 25, 2024

8/2/24

Max, ritika...@gmail.com2

12/5/23

Inaccessible Oncotree API and Need for Alternative Service

Hi Max, Does this link help:https://oncotree.info/#/home?tab=api Thanks, Ritika On Tuesday, November

unread,

Inaccessible Oncotree API and Need for Alternative Service

Hi Max, Does this link help:https://oncotree.info/#/home?tab=api Thanks, Ritika On Tuesday, November

12/5/23

nathan....@gmail.com, ritika...@gmail.com2

11/8/23

Non-specific Type Names

Thank you for the feedback. We will add this to our upcoming releases. On Tuesday, December 11, 2018

unread,

Non-specific Type Names

Thank you for the feedback. We will add this to our upcoming releases. On Tuesday, December 11, 2018

11/8/23

Sophia Rarhai, ritika...@gmail.com3

11/8/23

Disease data source

Hi Sophia, Apologies for the huge delay. We have worked with teams from MSK, DFCI, and St.Jude for

unread,

Disease data source

Hi Sophia, Apologies for the huge delay. We have worked with teams from MSK, DFCI, and St.Jude for

11/8/23

Maria Rusan, ritika...@gmail.com2

10/31/23

small bowel cancer vs. small intestinal carcinoma

Thanks, Maria. You are correct about them being the same. We will be merging them and adding

unread,

small bowel cancer vs. small intestinal carcinoma

Thanks, Maria. You are correct about them being the same. We will be merging them and adding

10/31/23

Hidekazu Hirano, ritika...@gmail.com2

10/20/23

Inquiry for Oncotree

Hello, Thank you for your inquiry and I apologize for the delay in response. We currently do only

unread,

Inquiry for Oncotree

Hello, Thank you for your inquiry and I apologize for the delay in response. We currently do only

10/20/23

Joseph Gerrein, Robert Sheridan3

8/14/23

How to download OncoTree data (tumor types)

Hi Rob, Thank you very much for your generous help and the time you spent on your reply! I did click

unread,

How to download OncoTree data (tumor types)

Hi Rob, Thank you very much for your generous help and the time you spent on your reply! I did click

8/14/23

Michael Piechotta, … Miguel Grau4

6/6/23

DOID (Cancer Subtree) <-> OncoTree

Hi Michael, Did you solve this? Facing the same problem now. The NCIt <-> Oncotree connection

unread,

DOID (Cancer Subtree) <-> OncoTree

Hi Michael, Did you solve this? Facing the same problem now. The NCIt <-> Oncotree connection

6/6/23

juan...@gmail.com, … Didier Croes6

6/6/23

URL to match tumor type

Great but Can you add this info on the API tab? I found this parameter looking into the js code and

unread,

URL to match tumor type

Great but Can you add this info on the API tab? I found this parameter looking into the js code and

6/6/23

2/26/23

reorg melanocytic nodes

Not sure why the previous screenshot didn't come through. Hopefully this one does. On Friday,

unread,

reorg melanocytic nodes

Not sure why the previous screenshot didn't come through. Hopefully this one does. On Friday,

2/26/23

Hassan Ghani, Ritika Kundra3

2/15/23

OncoTree page exceptionally slow to load

Yes, please use oncotree.info. Thanks, Ritika Kundra On Wed, Feb 15, 2023, 2:47 PM Hassan Ghani <

unread,

OncoTree page exceptionally slow to load

Yes, please use oncotree.info. Thanks, Ritika Kundra On Wed, Feb 15, 2023, 2:47 PM Hassan Ghani <

2/15/23

Michele LeNoue-Newton

9/13/22

New Suggestions for Oncotree nodes

Hi Ritika, In curating new GENIE specimens, we have run into some diagnoses that are not represented

unread,

New Suggestions for Oncotree nodes

Hi Ritika, In curating new GENIE specimens, we have run into some diagnoses that are not represented

9/13/22

8/24/22

MSKCC Kidney Cancer Type

Hello, I am a manager in the DigITs department and we curate information on the IMPACT cohort. We can

unread,

MSKCC Kidney Cancer Type

Hello, I am a manager in the DigITs department and we curate information on the IMPACT cohort. We can

8/24/22

Augustin Luna, Nikolaus Schultz2

4/29/22

Ensuring TCGA Acronyms are in Oncotree

Hi Augustin, This is a good point. We deliberately created new codes for certain tumor types (eg, “OV

unread,

Ensuring TCGA Acronyms are in Oncotree

Hi Augustin, This is a good point. We deliberately created new codes for certain tumor types (eg, “OV

4/29/22

3/29/22

R interface to OncoTree API

Hi All, I don't know if there are any R users in this community, but I'd like to share some

unread,

R interface to OncoTree API

Hi All, I don't know if there are any R users in this community, but I'd like to share some

3/29/22

3/29/22

color variable in the API

Hi OncoTree team, Just a suggestion, from a programming point of view, instead of returning the

unread,

color variable in the API

Hi OncoTree team, Just a suggestion, from a programming point of view, instead of returning the

3/29/22

3/27/22

history, revocations and precursors

Hi, In the context of the web API: http://oncotree.mskcc.org/swagger-ui.html#!/tumor-types-api, what

unread,

history, revocations and precursors

Hi, In the context of the web API: http://oncotree.mskcc.org/swagger-ui.html#!/tumor-types-api, what

3/27/22

Search

Clear search

Close search

Google apps

Main menu