OncoTree Users - Google Groups

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Welcome to the Oncotree Users google group. This is a forum to ask questions and discuss the Oncotree website and web services (available at oncotree.org).

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Nadia Bahadur, … rima.w.alhamad4

Jun 5

MSKCC Kidney Cancer Type

Hello Rima, Thank you so much. My apologies, as this email request was originally sent back in 2022,

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MSKCC Kidney Cancer Type

Hello Rima, Thank you so much. My apologies, as this email request was originally sent back in 2022,

Jun 5

Sidney Smith, … Raya7

May 31

ICD-O-3 to OncoTree Mapping

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ICD-O-3 to OncoTree Mapping

May 31

Jeremy Warner, … Raya4

May 31

OncoTree and tissue/cell of origin

Ok On Tuesday, August 26, 2025 at 7:23:48 PM UTC+1 Warner, Jeremy wrote: Hi Ritika, It looks like

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OncoTree and tissue/cell of origin

Ok On Tuesday, August 26, 2025 at 7:23:48 PM UTC+1 Warner, Jeremy wrote: Hi Ritika, It looks like

May 31

William Shao, … Raya4

May 31

NCI-H854 annotation

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NCI-H854 annotation

May 31

Samantha Stokes, … Raya5

May 31

Updates to Oncotree?

Ok thanks On Monday, May 5, 2025 at 10:22:26 PM UTC+1 ritika...@gmail.com wrote: Thank you for the

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Updates to Oncotree?

Ok thanks On Monday, May 5, 2025 at 10:22:26 PM UTC+1 ritika...@gmail.com wrote: Thank you for the

May 31

Sara Horie, … Raya6

May 31

Use of screenshots of OncoTree

Ok On Friday, March 14, 2025 at 12:23:32 PM UTC+1 Sara Horie wrote: Hi Ritika, Thank you for your

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Use of screenshots of OncoTree

Ok On Friday, March 14, 2025 at 12:23:32 PM UTC+1 Sara Horie wrote: Hi Ritika, Thank you for your

May 31

Anurag Saxena, … Raya5

May 31

ICDO Topography + Morphology pairing to Oncotree translation

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ICDO Topography + Morphology pairing to Oncotree translation

May 31

Dylan, … Raya3

May 31

Missing UMLS references

Thanks On Wednesday, January 22, 2025 at 7:55:08 PM UTC+1 ritika...@gmail.com wrote: Hi Dylan,

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Missing UMLS references

Thanks On Wednesday, January 22, 2025 at 7:55:08 PM UTC+1 ritika...@gmail.com wrote: Hi Dylan,

May 31

Alexander Paynter, … Raya5

May 31

New display feedback

Ok On Tuesday, December 31, 2024 at 7:27:26 PM UTC+1 ritika...@gmail.com wrote: Hi Cristina, Thank

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New display feedback

Ok On Tuesday, December 31, 2024 at 7:27:26 PM UTC+1 ritika...@gmail.com wrote: Hi Cristina, Thank

May 31

Robert Allaway, … Raya9

May 31

Addition of nerve sheath tumor subtypes?

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Addition of nerve sheath tumor subtypes?

May 31

Benjamin Gross, Raya2

May 31

Re: Moderator's spam report for oncotree-users@googlegroups.com

Ok On Friday, August 9, 2024 at 5:29:55 AM UTC+1 Benjamin Gross wrote: Thank you for your message. I

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Re: Moderator's spam report for oncotree-users@googlegroups.com

Ok On Friday, August 9, 2024 at 5:29:55 AM UTC+1 Benjamin Gross wrote: Thank you for your message. I

May 31

Benjamin Gyori, … Raya3

May 31

Add more mappings to NCIT/UMLS and other disease ontologies

Alright On Friday, August 2, 2024 at 9:55:14 PM UTC+1 ritika...@gmail.com wrote: Hi Ben, Thank you

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Add more mappings to NCIT/UMLS and other disease ontologies

Alright On Friday, August 2, 2024 at 9:55:14 PM UTC+1 ritika...@gmail.com wrote: Hi Ben, Thank you

May 31

Jiawen Li (Taylor‘s Wonderland), … Raya3

May 31

Website Unavailable

Had the same issues

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Website Unavailable

Had the same issues

May 31

May 31

Inaccessible Oncotree API and Need for Alternative Service

Thanks On Tuesday, December 5, 2023 at 9:42:34 PM UTC+1 ritika...@gmail.com wrote: Hi Max, Does this

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Inaccessible Oncotree API and Need for Alternative Service

Thanks On Tuesday, December 5, 2023 at 9:42:34 PM UTC+1 ritika...@gmail.com wrote: Hi Max, Does this

May 31

nathan....@gmail.com, … Raya3

May 31

Non-specific Type Names

Thank you On Wednesday, November 8, 2023 at 9:22:28 PM UTC+1 ritika...@gmail.com wrote: Thank you for

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Non-specific Type Names

Thank you On Wednesday, November 8, 2023 at 9:22:28 PM UTC+1 ritika...@gmail.com wrote: Thank you for

May 31

Sophia Rarhai, … Raya4

May 31

Disease data source

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Disease data source

May 31

Maria Rusan, … Raya3

May 31

small bowel cancer vs. small intestinal carcinoma

Thanks On Tuesday, October 31, 2023 at 9:05:07 PM UTC+1 ritika...@gmail.com wrote: Thanks, Maria. You

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small bowel cancer vs. small intestinal carcinoma

Thanks On Tuesday, October 31, 2023 at 9:05:07 PM UTC+1 ritika...@gmail.com wrote: Thanks, Maria. You

May 31

Hidekazu Hirano, … Raya3

May 30

Inquiry for Oncotree

Yeah I think so too

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Inquiry for Oncotree

Yeah I think so too

May 30

Joseph Gerrein, … Raya4

May 30

How to download OncoTree data (tumor types)

I'm going through all the messages testing every code and work On Tuesday, August 15, 2023 at 4:

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How to download OncoTree data (tumor types)

I'm going through all the messages testing every code and work On Tuesday, August 15, 2023 at 4:

May 30

Michael Piechotta, … Raya5

May 30

DOID (Cancer Subtree) <-> OncoTree

Me too On Tuesday, June 6, 2023 at 11:11:55 AM UTC+1 Miguel Grau wrote: Hi Michael, Did you solve

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DOID (Cancer Subtree) <-> OncoTree

Me too On Tuesday, June 6, 2023 at 11:11:55 AM UTC+1 Miguel Grau wrote: Hi Michael, Did you solve

May 30

juan...@gmail.com, … Raya7

May 30

URL to match tumor type

Yeah they are too large On Wednesday, May 8, 2019 at 12:37:10 AM UTC+1 juan...@gmail.com wrote: Sorry

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URL to match tumor type

Yeah they are too large On Wednesday, May 8, 2019 at 12:37:10 AM UTC+1 juan...@gmail.com wrote: Sorry

May 30

Hassan Ghani, Raya3

May 30

reorg melanocytic nodes

Ok with that On Sunday, February 26, 2023 at 7:18:10 PM UTC+1 Hassan Ghani wrote: Not sure why the

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reorg melanocytic nodes

Ok with that On Sunday, February 26, 2023 at 7:18:10 PM UTC+1 Hassan Ghani wrote: Not sure why the

May 30

Hassan Ghani, … Raya4

May 30

OncoTree page exceptionally slow to load

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OncoTree page exceptionally slow to load

May 30

Michele LeNoue-Newton, Raya2

May 30

New Suggestions for Oncotree nodes

Yes On Tuesday, September 13, 2022 at 10:50:28 PM UTC+1 Michele LeNoue-Newton wrote: Hi Ritika, In

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New Suggestions for Oncotree nodes

Yes On Tuesday, September 13, 2022 at 10:50:28 PM UTC+1 Michele LeNoue-Newton wrote: Hi Ritika, In

May 30

Zongxu Zhang, rima.w.alhamad2

May 13

For metastasis tumor and TNBC

Hi Zongxu, For colon cancer found in the liver (CRLM), OncoTree would still classify it as the

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For metastasis tumor and TNBC

Hi Zongxu, For colon cancer found in the liver (CRLM), OncoTree would still classify it as the

May 13

Matthew Stachowiak, rima.w.alhamad4

May 13

changes to disease names

Hi Matt, Thanks for the clarification. This does look like an unintended inconsistency in

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changes to disease names

Hi Matt, Thanks for the clarification. This does look like an unintended inconsistency in

May 13

Suhasini Lulla, rima.w.alhamad2

May 13

NCIt to OncoTree Mapping

Hi Suhasini, Thanks for reaching out! I replicated the mapping using COSMIC v103 and the ontology-to-

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NCIt to OncoTree Mapping

Hi Suhasini, Thanks for reaching out! I replicated the mapping using COSMIC v103 and the ontology-to-

May 13

Vishnu Govindaraj, ritika...@gmail.com2

Apr 27

OncoTree latest version rdf files

Hi Vishnu, We were hosting RDF files due to the requirement of the older platform. Since then, we

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OncoTree latest version rdf files

Hi Vishnu, We were hosting RDF files due to the requirement of the older platform. Since then, we

Apr 27

Hannah Calkins, Rima AlHamad2

11/20/25

Inactive Link - Oncotree to Oncotree Python Mapping Tool

Hi Hannah, Thanks for reporting the error; we're currently working on fixing the

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Inactive Link - Oncotree to Oncotree Python Mapping Tool

Hi Hannah, Thanks for reporting the error; we're currently working on fixing the

11/20/25

Augustin Luna, Nikolaus Schultz2

4/29/22

Ensuring TCGA Acronyms are in Oncotree

Hi Augustin, This is a good point. We deliberately created new codes for certain tumor types (eg, “OV

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Ensuring TCGA Acronyms are in Oncotree

Hi Augustin, This is a good point. We deliberately created new codes for certain tumor types (eg, “OV

4/29/22

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