Pypath install issue on macOS

25 views
Skip to first unread message

Luca

unread,
Jan 29, 2018, 8:18:55 AM1/29/18
to omni...@googlegroups.com
Dear Sirs, I’m Luca De Luise, bioinformatics student of Rome Tor Vergata.
I’m trying to install Pypath Python module in Python3.6 on my Macbook pro retina mid 2014 with macOS 10.13.2. I have an issue in installation using mac-install-conda.sh file: no module named ‘Pypath’.
I tried to install in a conda virtual environment deleting possibility of wrong dependancies. I attached you a full log of installation issue, I hope this helps to find a solution. Thank you in advance.

Luca De Luise




pypath_installation_log.txt

Dénes Türei

unread,
Jan 29, 2018, 11:57:28 AM1/29/18
to Omnipath
Dear Luca De Luise,

From your log it seems `pycairo` have been installed. First you should check this by starting a Python shell:

/Users/luca/anaconda3/bin/python

Import `pycairo` and check also `igraph` and `pypath` they might be already installed:

import cairo
import igraph
import pypath

If for some reason `python-igraph` could not be installed from the bioconda channel try some other channels, e.g.

conda install -y -c marufr python-igraph

Once it is installed try to import again `pypath`.
Don't hesitate to write if still does not work.

Best wishes,

Denes

Luca

unread,
Feb 2, 2018, 10:57:53 AM2/2/18
to omni...@googlegroups.com
Dear Sirs, I’m Luca De Luise, bioinformatics student of Rome Tor Vergata. I wrote you two days ago but I didn’t have any response. I’m waiting for that, thank you in advance.
Reply all
Reply to author
Forward
0 new messages