PyPath not installed properly on Windows

[Chen Yu Sun]

Dear Omnipath team, 

I am trying to install pypath module on Windows. I have followed the instructions on https://github.com/saezlab/pypath#microsoft-windows and installed each package successfully. However, I get an error when I tested with pa = pypath.PyPath(). The error message is AttributeError: module 'pypath' has no attribute 'PyPath'. I am installing on Windows 10 and python version 3.7. I am new to the installation process so let me know if you need further information to diagnose the problem. Thank you very much for your help. 

Best regards, 

Chen-Yu

[Dénes Türei]

Dear Chen-Yu,

Pypath changed a lot over the past months, the `PyPath` object is now
accessible from the `main` module:

from pypath import main
pa = main.PyPath()

This is because the module became highly modular, we don't import all
submodules by default.

Please see our up to date new tutorial:

http://pypath.omnipathdb.org/notebooks/pypath_guide.html

Best wishes,

Denes

El mar., 11 jun. 2019 a las 21:38, Chen Yu Sun
(<chen...@buffalo.edu>) escribió:

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--
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[Tamas Korcsmaros (EI)]

Hi Dénes,

Should not we update then the text on the GitHub?

We should properly document all these changes. My feeling is that one such email is a sign for 5-10 times more  people who tried it but did not write to us.

Thanks,

Tamas

---

Feladó: omni...@googlegroups.com <omni...@googlegroups.com> Dénes Türei <turei...@gmail.com> nevében
Elküldte: szerda, június 12, 2019 11:29 de.
Címzett: Chen Yu Sun
Másolatot kap: omni...@googlegroups.com
Tárgy: Re: [omnipath] PyPath not installed properly on Windows

 

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[Dénes Türei]

Hi Tamas,

You are right, although I update it sometimes we are lagging behind
with it, but soon I will revise thoroughly.

Best,

Denes

El mié., 12 jun. 2019 a las 12:37, Tamas Korcsmaros (EI)
(<Tamas.Ko...@earlham.ac.uk>) escribió:

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[Tamas Korcsmaros (EI)]

Hi Denes,

Ok, many thanks!

Tamas