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lorenzo.f...@gmail.com
,
turei...@gmail.com
4
9/12/19
Q&A
Retrieving interactions given compound name
Hi Lorenzo, One way is to use the web service: Let's say your proteins are P00533,O75385,P42345
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Q&A
Retrieving interactions given compound name
Hi Lorenzo, One way is to use the web service: Let's say your proteins are P00533,O75385,P42345
9/12/19
David Sheppard
,
lorenzo.f...@gmail.com
2
9/3/19
OmniPath Cytoscape plugin
You can simply add it from App -> App Manager. On Monday, July 29, 2019 at 5:59:28 PM UTC+2, David
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OmniPath Cytoscape plugin
You can simply add it from App -> App Manager. On Monday, July 29, 2019 at 5:59:28 PM UTC+2, David
9/3/19
William Newell
,
Dénes Türei
2
7/16/19
Omnipath data download
Hi William, On http://omnipathdb.org/ if you click "data" you find guidance about download
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Omnipath data download
Hi William, On http://omnipathdb.org/ if you click "data" you find guidance about download
7/16/19
Chen Yu Sun
, …
Tamas Korcsmaros (EI)
5
7/10/19
PyPath not installed properly on Windows
Hi Denes, Ok, many thanks! Tamas On 09/07/2019, 20:50, "Dénes Türei" <turei.denes@gmail
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PyPath not installed properly on Windows
Hi Denes, Ok, many thanks! Tamas On 09/07/2019, 20:50, "Dénes Türei" <turei.denes@gmail
7/10/19
David Otasek
6/20/19
Re: Cytoscape Helpdesk OmniPath
Hello, There are a few OmniPath App users asking questions in the Cytoscape Helpdesk group. https://
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Re: Cytoscape Helpdesk OmniPath
Hello, There are a few OmniPath App users asking questions in the Cytoscape Helpdesk group. https://
6/20/19
zhangl...@163.com
6/18/19
mini hdmi wiki cavi audio professionali usb pigtail cable audio usb jack car
Hey Sir/Madam how is it going? Glad to hear that you're on the market for XLR connectors, audio
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mini hdmi wiki cavi audio professionali usb pigtail cable audio usb jack car
Hey Sir/Madam how is it going? Glad to hear that you're on the market for XLR connectors, audio
6/18/19
Alex Pico
,
Julio Saez-Rodriguez
2
5/17/19
OmniPath Question
Thanks Alex for forwarding. Sied - thanks for the interest! We are in fact writteig up a small paper
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OmniPath Question
Thanks Alex for forwarding. Sied - thanks for the interest! We are in fact writteig up a small paper
5/17/19
Schaarschmidt, Marco
,
Dénes Türei
2
2/20/19
OmniPath webservice disease filter
Dear Marco, Thanks for your interest. Disease, tissue or cell type specificity or expression or
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OmniPath webservice disease filter
Dear Marco, Thanks for your interest. Disease, tissue or cell type specificity or expression or
2/20/19
김학현
, …
gabor.a...@gmail.com
3
1/24/19
Troubles using Omnipath in cytoscape
Hi, the new version (v1.2) is available from the app store. best, Attila On Tuesday, 22 January 2019
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Troubles using Omnipath in cytoscape
Hi, the new version (v1.2) is available from the app store. best, Attila On Tuesday, 22 January 2019
1/24/19
Ong, Chuang Kee
1/6/19
Omnipath DB
Hi Omnipath Team, Good day ! My name is CK Ong, Principal Scientist for the Informatics &
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Omnipath DB
Hi Omnipath Team, Good day ! My name is CK Ong, Principal Scientist for the Informatics &
1/6/19
Menglin ZHENG
,
Dénes Türei
2
11/15/18
problem about hcluster
Dear Menglin, This is only an informative message, not an error. I would suggest to ignore it. Best
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problem about hcluster
Dear Menglin, This is only an informative message, not an error. I would suggest to ignore it. Best
11/15/18
Jinwoo Leem
,
Dénes Türei
2
8/14/18
OmniPath Data Versions
Hi Jin, In the web service we first loaded the data in 2016 and updated only recently, 14 June this
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OmniPath Data Versions
Hi Jin, In the web service we first loaded the data in 2016 and updated only recently, 14 June this
8/14/18
Nathan Dennen
7/16/18
Omnipath Introduction to Flipcause
Hi Executive Director, I hope you're having a great day! I came across Omnipath again a few days
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Omnipath Introduction to Flipcause
Hi Executive Director, I hope you're having a great day! I came across Omnipath again a few days
7/16/18
Luca Fumis
,
Dénes Türei
4
6/29/18
omnipathdb.org/interactions endpoint response
Hi Luca, Indeed the "sources" field became a ";" separated string instead of list
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omnipathdb.org/interactions endpoint response
Hi Luca, Indeed the "sources" field became a ";" separated string instead of list
6/29/18
Dongze
,
Dénes Türei
2
6/15/18
Require Simpson index
Hi Dongze, I used Simpson index to quantify the similarity between resources. Simpson index is a
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Require Simpson index
Hi Dongze, I used Simpson index to quantify the similarity between resources. Simpson index is a
6/15/18
Joan Ramirez
6/8/18
Omnipath Introduction to Flipcause
Hi Executive Director, I work for Flipcause. We're a technology company committed to making it
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Omnipath Introduction to Flipcause
Hi Executive Director, I work for Flipcause. We're a technology company committed to making it
6/8/18
Joan Ramirez
5/18/18
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
unread,
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
5/18/18
Joan Ramirez
4/20/18
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
unread,
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
4/20/18
Joan Ramirez
3/27/18
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
unread,
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
3/27/18
Luca
,
Dénes Türei
3
2/2/18
Pypath install issue on macOS
Dear Sirs, I'm Luca De Luise, bioinformatics student of Rome Tor Vergata. I wrote you two days
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Pypath install issue on macOS
Dear Sirs, I'm Luca De Luise, bioinformatics student of Rome Tor Vergata. I wrote you two days
2/2/18
Joan Ramirez
12/19/17
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
unread,
Omnipath Introduction to Flipcause
Hi , I hope you're having a great day! I came across Omnipath again a few days ago and I think we
12/19/17
Marcio Luis Acencio
,
Dénes Türei
2
12/13/17
Omnipath: database schema
Hi Marcio, Thank you for your mail. I am very glad you connect OmniPath into your service. I haven
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Omnipath: database schema
Hi Marcio, Thank you for your mail. I am very glad you connect OmniPath into your service. I haven
12/13/17
Mitch Wagner
,
Dénes Türei
2
12/4/17
Detection Method Tracking
Hi Mitch, Thank you for your interest. The software behind OmniPath is `pypath` and what you see in
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Detection Method Tracking
Hi Mitch, Thank you for your interest. The software behind OmniPath is `pypath` and what you see in
12/4/17
Joan Ramirez
2
10/10/17
Omnipath Introduction to Flipcause
Hi , I hope you're doing well! Awhile back, I sent a note introducing Flipcause and I just wanted
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Omnipath Introduction to Flipcause
Hi , I hope you're doing well! Awhile back, I sent a note introducing Flipcause and I just wanted
10/10/17
Lehoczky Zsombor
, …
Lehoczky Zsombor
3
9/1/17
OmniPath pathway annotation issue
Hi Denes, Thanks for your response. It was huge help. I've been using v0.7.7, but now I upgraded
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OmniPath pathway annotation issue
Hi Denes, Thanks for your response. It was huge help. I've been using v0.7.7, but now I upgraded
9/1/17
Taylor M Sorenson
,
Dénes Türei
2
8/29/17
Trouble installing pypath
Dear Taylor, Apologies for late reply, I was on holidays in the past weeks. As I see the modules
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Trouble installing pypath
Dear Taylor, Apologies for late reply, I was on holidays in the past weeks. As I see the modules
8/29/17
Eleni Ioanna Delatola
,
Dénes Türei
3
7/4/17
Problems Installing OMNIPATH
Dear Dénes, Thank you for your prompt reply. Regarding pa.graph.vcount() and pa.graph.ecount(), I do
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Problems Installing OMNIPATH
Dear Dénes, Thank you for your prompt reply. Regarding pa.graph.vcount() and pa.graph.ecount(), I do
7/4/17
Rodriguez Martinez, Andrea
,
Dénes Türei
2
5/24/17
licence
Dear Andrea, Licencing was an important issue when creating OmniPath: we carefully checked the
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licence
Dear Andrea, Licencing was an important issue when creating OmniPath: we carefully checked the
5/24/17
Denis Schapiro
,
Dénes Türei
3
5/23/17
Cell line information
Dear Denes, Thank you very much for your kind reply and examples. I will play around with it and get
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Cell line information
Dear Denes, Thank you very much for your kind reply and examples. I will play around with it and get
5/23/17
Marcio Luis Acencio
,
Dénes Türei
3
5/17/17
Pypath and direct and indirect interactions
Dear Marcio, In this file: http://string-db.org/download/protein.actions.v10.5/9606.protein.actions.
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Pypath and direct and indirect interactions
Dear Marcio, In this file: http://string-db.org/download/protein.actions.v10.5/9606.protein.actions.
5/17/17