OmicsPlayground and Phospho-proteomic analysis?

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Chris Gonzales

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Nov 21, 2024, 11:47:54 AM11/21/24

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Can one use OmicsPlayground for Phospho-proteomic analysis?

Chris

Ivo Kwee

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Jan 13, 2025, 2:40:39 PMJan 13

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Yes. You could append the phospho site position to your probe as AAAA_123, or add a second column in your counts file with column name 'position'. Select ''proteomics' as datatype and Omics Playground will then recognize the number as modification site position and automatically annotate it with the phospo residue. Let us know if it works. Best. Ivo

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